[Evolution] MailDir + unSYNC + Invalid Root on Evo 1.4.6

This is the case

OS : Gentoo
Evo 1.4.6
Mailing List (~40,000 emails, 295MB)
Office Emails  (2088 emails, 533MB)
/home is XFS
Laptop Hard Drive (hdparm ~30MB/s)

I migrated from Mbox format to MailDir format hoping that I would see
faster performance from this. But the results are that the opposite is

I frequently get this unSYNC flag and it keeps hanging because it
reports the message index is out of sync. And it will force a Re-Sync
and thus, Evo will stop responding while it does it's Job.

I've also had a number of hard-freezes.

This is what it spits out, (running evo from the command line)

-----This was one cause of freeze(from bug-buddy)----

Backtrace was generated from '/usr/bin/evolution-1.4'

(no debugging symbols found)...Using host libthread_db library "/lib/libthread_db.so.1".
Using host libthread_db library "/lib/libthread_db.so.1".
0x417d2b6b in ?? ()
#0  0x417d2b6b in ?? ()
#1  0x4059ab88 in ?? ()
Using host libthread_db library "/lib/libthread_db.so.1".


-----------This is written on xterm------------

olution:21522): camel-WARNING **: Encountered Windows charset parading as iso-8859-1
(evolution:19956): GLib-GObject-WARNING **: gsignal.c:1738: instance `0x852cd978' has no handler with id 
(evolution:19974): camel-WARNING **: Could not find key entry for word 'earned': Bad file descriptor
camel-ERROR **: file camel-partition-table.c: line 897 (camel_key_table_lookup): assertion failed: (index < 
Xlib: unexpected async reply (sequence 0xc6fda)!
Then it crashes

I also see a lot of these error messages each time it tries to re-sync

evolution:24921): camel-WARNING **: Invalid root: 
(evolution:24921): camel-WARNING **: version: TEXT.000 (TEXT.000)
(evolution:24921): camel-WARNING **: block size: 1024 (1024) OK
(evolution:24921): camel-WARNING **: free: 0 (0 add size < 978944) OK
(evolution:24921): camel-WARNING **: last: 974848 (974848 and size: 978944) BAD
(evolution:24921): camel-WARNING **: flags: unSYNC
(evolution:24921): camel-WARNING **: Cannot create charset conversion from X-UNKNOWN to UTF-8: Invalid 
(evolution:24921): camel-WARNING **: Cannot convert 'X-UNKNOWN' to 'UTF-8', message index may be corrupt


I'm in the midst of refreshing my Fedora Mail list folders into 3 months period.

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