[chronojump] ForceSensorExport on new class
- From: Xavier de Blas <xaviblas src gnome org>
- To: commits-list gnome org
- Cc:
- Subject: [chronojump] ForceSensorExport on new class
- Date: Wed, 3 Feb 2021 16:59:36 +0000 (UTC)
commit 3e9731da34994a0f916a851c64d7f1012ca9f866
Author: Xavier de Blas <xaviblas gmail com>
Date: Wed Feb 3 17:59:03 2021 +0100
ForceSensorExport on new class
src/forceSensor.cs | 254 ++++++++++++++++++++++++++++++++++++-
src/gui/app1/forceSensorAnalyze.cs | 195 ++--------------------------
2 files changed, 267 insertions(+), 182 deletions(-)
---
diff --git a/src/forceSensor.cs b/src/forceSensor.cs
index 515e32c3..a2723653 100644
--- a/src/forceSensor.cs
+++ b/src/forceSensor.cs
@@ -15,11 +15,12 @@
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
- * Copyright (C) 2017-2020 Xavier de Blas <xaviblas gmail com>
+ * Copyright (C) 2017-2021 Xavier de Blas <xaviblas gmail com>
*/
using System;
using System.IO; //for detect OS //TextWriter
+using System.Collections; //ArrayList
using System.Collections.Generic; //List<T>
using Mono.Unix;
@@ -1434,6 +1435,7 @@ public class ForceSensorGraph
private void writeOptionsFile(int graphWidth, int graphHeight)
{
+LogB.Information("writeOptionsFile 0");
string scriptsPath = UtilEncoder.GetSprintPath();
if(UtilAll.IsWindows())
scriptsPath = scriptsPath.Replace("\\","/");
@@ -1441,6 +1443,7 @@ public class ForceSensorGraph
System.Globalization.NumberFormatInfo localeInfo = new
System.Globalization.NumberFormatInfo();
localeInfo = System.Globalization.NumberFormatInfo.CurrentInfo;
+LogB.Information("writeOptionsFile 1");
//since 2.0.3 decimalChar is . (before it was locale specific)
string decimalChar = ".";
if(! decimalIsPoint)
@@ -1460,17 +1463,20 @@ public class ForceSensorGraph
"#hline50fmax.fitted\n" + Util.BoolToRBool(hline50fmax_fitted) + "\n" +
"#RFDs";
+LogB.Information("writeOptionsFile 2");
foreach(ForceSensorRFD rfd in rfdList)
if(rfd.active)
scriptOptions += "\n" + rfd.ToR();
else
scriptOptions += "\n-1";
+LogB.Information("writeOptionsFile 3");
if(impulse.active)
scriptOptions += "\n" + impulse.ToR();
else
scriptOptions += "\n-1";
+LogB.Information("writeOptionsFile 4");
scriptOptions +=
"\n#testLength\n" + testLength.ToString() + "\n" +
"#captureOptions\n" + fsco.ToString() + "\n" +
@@ -1491,11 +1497,13 @@ public class ForceSensorGraph
- startEndOptimized TRUE (default): optimized range (program will find best fitting samples
on user selected range)
*/
+LogB.Information("writeOptionsFile 5");
TextWriter writer = File.CreateText(Path.GetTempPath() + "Roptions.txt");
writer.Write(scriptOptions);
writer.Flush();
writer.Close();
((IDisposable)writer).Dispose();
+LogB.Information("writeOptionsFile 6");
}
private string printTriggers(TriggerList.Type3 type3)
@@ -2115,6 +2123,250 @@ public class ForceSensorAnalyzeInstant
}
}
+public class ForceSensorExport
+{
+ //passed variables
+ private bool isWindows;
+ private int sessionID;
+ private List<ForceSensorRFD> rfdList;
+ private ForceSensorImpulse impulse;
+ private int duration;
+ private int durationPercent;
+ private double forceSensorElasticEccMinDispl;
+ public int forceSensorNotElasticEccMinForce;
+ public double forceSensorElasticConMinDispl;
+ public int forceSensorNotElasticConMinForce;
+ public bool forceSensorStartEndOptimized;
+ public string CSVExportDecimalSeparator;
+
+ List<ForceSensor> fs_l;
+ ArrayList personSession_l;
+ ArrayList fsEx_l;
+ List<string> exportedRFDs;
+ private int imageWidth = 300; //nothing is displayed, remove when R script has been adapted
+ private int imageHeight = 300; //nothing is displayed, remove when R script has been adapted
+
+ //constructor
+ public ForceSensorExport (
+ bool isWindows, int sessionID,
+ List<ForceSensorRFD> rfdList, ForceSensorImpulse impulse,
+ int duration, int durationPercent,
+ double forceSensorElasticEccMinDispl,
+ int forceSensorNotElasticEccMinForce,
+ double forceSensorElasticConMinDispl,
+ int forceSensorNotElasticConMinForce,
+ bool forceSensorStartEndOptimized,
+ string CSVExportDecimalSeparator)
+
+ {
+ this.isWindows = isWindows;
+ this.sessionID = sessionID;
+ this.rfdList = rfdList;
+ this.impulse = impulse;
+ this.duration = duration;
+ this.durationPercent = durationPercent;
+ this.forceSensorElasticEccMinDispl = forceSensorElasticEccMinDispl;
+ this.forceSensorNotElasticEccMinForce = forceSensorNotElasticEccMinForce;
+ this.forceSensorElasticConMinDispl = forceSensorElasticConMinDispl;
+ this.forceSensorNotElasticConMinForce = forceSensorNotElasticConMinForce;
+ this.forceSensorStartEndOptimized = forceSensorStartEndOptimized;
+ this.CSVExportDecimalSeparator = CSVExportDecimalSeparator;
+ }
+
+ ///public method
+ public void Start()
+ {
+ getData();
+ processForceSensorSets();
+ writeFile();
+ }
+
+ private void getData ()
+ {
+ fs_l = SqliteForceSensor.Select(false, -1, -1, sessionID);
+ personSession_l = SqlitePersonSession.SelectCurrentSessionPersons(sessionID, true);
+ fsEx_l = SqliteForceSensorExercise.Select (false, -1, false);
+ exportedRFDs = new List<string>();
+ }
+
+ private void processForceSensorSets ()
+ {
+ Person p = new Person();
+ PersonSession ps = new PersonSession();
+
+ foreach(ForceSensor fs in fs_l)
+ {
+ // 1) checks
+ //check fs is ok
+ if(fs == null || ! Util.FileExists(fs.FullURL))
+ continue;
+
+ //check fs has data
+ List<string> contents = Util.ReadFileAsStringList(fs.FullURL);
+ if(contents.Count < 3)
+ {
+ //new DialogMessage(Constants.MessageTypes.WARNING, Constants.FileEmptyStr());
+ //return;
+ continue;
+ }
+
+ // 2) get the person
+ bool found = false;
+ foreach(PersonAndPS paps in personSession_l)
+ {
+ if(paps.p.UniqueID == fs.PersonID)
+ {
+ p = paps.p;
+ ps = paps.ps;
+
+ found = true;
+ break;
+ }
+ }
+ if(! found)
+ continue;
+
+ // 3) get the exercise
+ found = false;
+ ForceSensorExercise fsEx = new ForceSensorExercise();
+ foreach(ForceSensorExercise fsExTemp in fsEx_l)
+ if(fsExTemp.UniqueID == fs.ExerciseID)
+ {
+ fsEx = fsExTemp;
+ found = true;
+ break;
+ }
+ if(! found)
+ continue;
+
+ double eccMinDispl = fsEx.GetEccOrConMinMaybePreferences(true,
+ forceSensorElasticEccMinDispl,
+ forceSensorNotElasticEccMinForce);
+ double conMinDispl = fsEx.GetEccOrConMinMaybePreferences(false,
+ forceSensorElasticConMinDispl,
+ forceSensorNotElasticConMinForce);
+
+ // 4) create fsAI (includes the repetitions)
+ ForceSensorAnalyzeInstant fsAI = new ForceSensorAnalyzeInstant(
+ fs.FullURL,
+ imageWidth, imageHeight,
+ -1, -1,
+ fsEx, ps.Weight,
+ fs.CaptureOption, fs.Stiffness,
+ eccMinDispl, conMinDispl
+ );
+
+ // 5) call R
+ string title = p.Name;
+ string exercise = fsEx.Name;
+ if (isWindows) {
+ title = Util.ConvertToUnicode(title);
+ exercise = Util.ConvertToUnicode(exercise);
+ }
+ if (title == null || title == "")
+ title = "unnamed";
+
+ //copy file to tmp to be written readed by R
+ File.Copy(fs.FullURL, UtilEncoder.GetmifCSVFileName(), true); //can be overwritten
+
+ //delete result file
+ Util.FileDelete(UtilEncoder.GetmifExportFileName());
+
+ //TODO: només les concèntriques
+ foreach(ForceSensorRepetition rep in fsAI.ForceSensorRepetition_l)
+ {
+ ForceSensorGraph fsg = new ForceSensorGraph(fs.CaptureOption, rfdList,
impulse,
+ duration, durationPercent,
+ title, exercise, fs.DateTimePublic, new TriggerList(),
+ rep.sampleStart, rep.sampleEnd, forceSensorStartEndOptimized,
+ Util.CSVDecimalColumnIsPoint(UtilEncoder.GetmifCSVFileName(),
1) // (*)
+ );
+
+ bool success = fsg.CallR(imageWidth -5, imageHeight -5);
+ }
+
+ //TODO: or check cancel when there is a thread, also R should write something blank
if there is any problem
+ //also the problem with this code is: if R code fails for any reason (bad data), will
exit R code and this file will never be created
+ /*
+ LogB.Information("Waiting creation of file... ");
+ while ( ! ( Util.FileReadable(UtilEncoder.GetmifExportFileName())))
+ ;
+ */
+
+ // 6) write exportedRFDs (includes impulse)
+ if(File.Exists(UtilEncoder.GetmifExportFileName()))
+ {
+ List<string> repRFDs =
Util.ReadFileAsStringList(UtilEncoder.GetmifExportFileName());
+ int countRep = 0; //0 will be the header
+ foreach(string row in repRFDs)
+ {
+ //discard header
+ if(countRep == 0)
+ {
+ countRep ++;
+ continue;
+ }
+ //TODO: respect latin/not latin (decimal character, column separator)
+ exportedRFDs.Add(p.Name + ";" + fs.DateTimePublic + ";" +
+ fsEx.Name + ";" + (countRep++).ToString() + ";" +
fs.Laterality + ";" +
+ row);
+ }
+ }
+ }
+ }
+
+ private bool writeFile()
+ {
+ string destination = UtilEncoder.GetmifExportFileName();
+ Util.FileDelete(destination);
+ try {
+ //this overwrites if needed
+ TextWriter writer = File.CreateText(destination);
+
+ string sep = " ";
+ if (CSVExportDecimalSeparator == "COMMA")
+ sep = ";";
+ else
+ sep = ",";
+
+ //write header
+ string [] headers = { "Person", "Datetime", "Exercise", "Repetition", "Laterality"};
+ int i = 0;
+ foreach(ForceSensorRFD rfd in rfdList)
+ {
+ if(rfdList[i].Active)
+ headers = Util.AddArrayString(headers,
+ string.Format("RFD{0}", i+1) + "_" +
rfd.ToExport(true, "_"),
+ false);
+ i ++;
+ }
+ if(impulse.Active)
+ headers = Util.AddArrayString(headers,
+ Catalog.GetString("Impulse") + "_" + impulse.ToExport(true,
"_"),
+ false);
+
+ writer.WriteLine(Util.RemoveNewLine(Util.StringArrayToString(headers, sep), false));
+
+ //write data
+ foreach(string str in exportedRFDs)
+ writer.WriteLine(str);
+
+ writer.Flush();
+ writer.Close();
+ ((IDisposable)writer).Dispose();
+
+ return true;
+ } catch {
+ string myString = string.Format(
+ Catalog.GetString("Cannot save file {0} "), destination);
+ //new DialogMessage(Constants.MessageTypes.WARNING, myString);
+ LogB.Information("Error: " + myString);
+
+ return false;
+ }
+ }
+}
+
//we need this class because we started using forcesensor without database (only text files)
public class ForceSensorLoadTryToAssignPersonAndMore
{
diff --git a/src/gui/app1/forceSensorAnalyze.cs b/src/gui/app1/forceSensorAnalyze.cs
index 78d8f8ed..1fff15ca 100644
--- a/src/gui/app1/forceSensorAnalyze.cs
+++ b/src/gui/app1/forceSensorAnalyze.cs
@@ -24,7 +24,6 @@ using Gtk;
using Gdk;
using Glade;
using System.Text; //StringBuilder
-using System.Collections; //ArrayList
using System.Collections.Generic; //List<T>
using Mono.Unix;
@@ -681,190 +680,24 @@ public partial class ChronoJumpWindow
bool force_sensor_ai_drawingareaShown = false;
- //TODO: separate in thread
private void on_button_force_sensor_export_session_clicked (object o, EventArgs args)
{
- // 1) Select force sensor files and force sensor exercises
- List<ForceSensor> fs_l = SqliteForceSensor.Select(false, -1, -1, currentSession.UniqueID);
- ArrayList personSession_l =
SqlitePersonSession.SelectCurrentSessionPersons(currentSession.UniqueID, true);
- ArrayList fsEx_l = SqliteForceSensorExercise.Select (false, -1, false);
- List<string> exportedRFDs = new List<string>();
+ int duration = -1;
+ if(radio_force_duration_seconds.Active)
+ duration = Convert.ToInt32(spin_force_duration_seconds.Value);
- foreach(ForceSensor fs in fs_l)
- {
- //check fs is ok
- if(fs == null || ! Util.FileExists(fs.FullURL))
- continue;
-
- //check fs has data
- List<string> contents = Util.ReadFileAsStringList(fs.FullURL);
- if(contents.Count < 3)
- {
- new DialogMessage(Constants.MessageTypes.WARNING, Constants.FileEmptyStr());
- return;
- }
-
- //get the person
- string personName = "";
- double personWeight = 0;
- bool found = false;
- foreach(PersonAndPS paps in personSession_l)
- {
- if(paps.p.UniqueID == fs.PersonID)
- {
- personName = paps.p.Name;
- personWeight = paps.ps.Weight;
- found = true;
- break;
- }
- }
- if(! found)
- continue;
-
- //get the exercise
- found = false;
- ForceSensorExercise fsEx = new ForceSensorExercise();
- foreach(ForceSensorExercise fsExTemp in fsEx_l)
- if(fsExTemp.UniqueID == fs.ExerciseID)
- {
- fsEx = fsExTemp;
- found = true;
- break;
- }
- if(! found)
- continue;
-
- double eccMinDispl = fsEx.GetEccOrConMinMaybePreferences(true,
- preferences.forceSensorElasticEccMinDispl,
- preferences.forceSensorNotElasticEccMinForce);
- double conMinDispl = fsEx.GetEccOrConMinMaybePreferences(false,
- preferences.forceSensorElasticConMinDispl,
- preferences.forceSensorNotElasticConMinForce);
-
- // 3) create fsAI (includes the repetitions
- fsAI = new ForceSensorAnalyzeInstant(
- fs.FullURL,
- force_sensor_ai_drawingarea.Allocation.Width,
- force_sensor_ai_drawingarea.Allocation.Height,
- -1, -1,
- fsEx, personWeight,
- fs.CaptureOption, fs.Stiffness,
- eccMinDispl, conMinDispl
- );
-
- // 4) call R
- int imageWidth = UtilGtk.WidgetWidth(viewport_force_sensor_graph);
- int imageHeight = UtilGtk.WidgetHeight(viewport_force_sensor_graph);
- if(imageWidth < 300)
- imageWidth = 300; //Not crash R with a png height of -1 or "figure margins
too large"
- if(imageHeight < 300)
- imageHeight = 300; //Not crash R with a png height of -1 or "figure margins
too large"
-
- int duration = -1;
- if(radio_force_duration_seconds.Active)
- duration = Convert.ToInt32(spin_force_duration_seconds.Value);
-
- //string title = lastForceSensorFile;
- string title = personName;
- string exercise = fsEx.Name;
- if (UtilAll.IsWindows()) {
- title = Util.ConvertToUnicode(title);
- exercise = Util.ConvertToUnicode(exercise);
- }
- if (title == null || title == "")
- title = "unnamed";
-
- //copy file to tmp to be written readed by R
- File.Copy(fs.FullURL, UtilEncoder.GetmifCSVFileName(), true); //can be overwritten
-
- //delete result file
- Util.FileDelete(UtilEncoder.GetmifExportFileName());
-
- //TODO: només les concèntriques
- foreach(ForceSensorRepetition rep in fsAI.ForceSensorRepetition_l)
- {
- ForceSensorGraph fsg = new ForceSensorGraph(fs.CaptureOption, rfdList,
impulse,
- duration,
Convert.ToInt32(spin_force_rfd_duration_percent.Value),
- title, exercise, fs.DateTimePublic, new TriggerList(),
- rep.sampleStart, rep.sampleEnd,
preferences.forceSensorStartEndOptimized,
- Util.CSVDecimalColumnIsPoint(UtilEncoder.GetmifCSVFileName(),
1) // (*)
- );
-
- bool success = fsg.CallR(imageWidth -5, imageHeight -5);
- }
-
- //TODO: or check cancel when there is a thread, also R should write something blank
if there is any problem
- //also the problem with this code is: if R code fails for any reason (bad data), will
exit R code and this file will never be created
- /*
- LogB.Information("Waiting creation of file... ");
- while ( ! ( Util.FileReadable(UtilEncoder.GetmifExportFileName())))
- ;
- */
-
- if(File.Exists(UtilEncoder.GetmifExportFileName()))
- {
- List<string> repRFDs =
Util.ReadFileAsStringList(UtilEncoder.GetmifExportFileName());
- int countRep = 0; //0 will be the header
- foreach(string row in repRFDs)
- {
- //discard header
- if(countRep == 0)
- {
- countRep ++;
- continue;
- }
- //TODO: respect latin/not latin (decimal character, column separator)
- exportedRFDs.Add(personName + ";" + fs.DateTimePublic + ";" +
- fsEx.Name + ";" + (countRep++).ToString() + ";" +
fs.Laterality + ";" +
- row);
- }
- }
- }
-
- string destination = UtilEncoder.GetmifExportFileName();
- Util.FileDelete(destination);
- try {
- //this overwrites if needed
- TextWriter writer = File.CreateText(destination);
-
- string sep = " ";
- if (preferences.CSVExportDecimalSeparator == "COMMA")
- sep = ";";
- else
- sep = ",";
-
- //write header
- string [] headers = { "Person", "date", "Exercise", "Repetition", "Laterality"};
- int i = 0;
- foreach(ForceSensorRFD rfd in rfdList)
- {
- if(rfdList[i].Active)
- headers = Util.AddArrayString(headers,
- string.Format("RFD{0}", i+1) + "_" +
rfd.ToExport(true, "_"),
- false);
- i ++;
- }
- ForceSensorImpulse tempImpulse = getImpulseValue ();
- if(tempImpulse.Active)
- headers = Util.AddArrayString(headers,
- Catalog.GetString("Impulse") + "_" +
tempImpulse.ToExport(true, "_"),
- false);
-
- writer.WriteLine(Util.RemoveNewLine(Util.StringArrayToString(headers, sep), false));
-
- //write data
- foreach(string str in exportedRFDs)
- writer.WriteLine(str);
-
- writer.Flush();
- writer.Close();
- ((IDisposable)writer).Dispose();
- } catch {
- string myString = string.Format(
- Catalog.GetString("Cannot save file {0} "), destination);
- new DialogMessage(Constants.MessageTypes.WARNING, myString);
- }
+ ForceSensorExport fse = new ForceSensorExport (
+ UtilAll.IsWindows(), currentSession.UniqueID,
+ rfdList, impulse,//getImpulseValue(),
+ duration, Convert.ToInt32(spin_force_rfd_duration_percent.Value),
+ preferences.forceSensorElasticEccMinDispl,
+ preferences.forceSensorNotElasticEccMinForce,
+ preferences.forceSensorElasticConMinDispl,
+ preferences.forceSensorNotElasticConMinForce,
+ preferences.forceSensorStartEndOptimized,
+ preferences.CSVExportDecimalSeparator);
+ fse.Start();
}
private void forceSensorDoGraphAI(bool windowResizedAndZoom)
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