[ostree] core: Associate branches with remotes, move trigger runs into checkout



commit bae584c64ab2ee3c669e81389cf0133bd9608ec2
Author: Colin Walters <walters verbum org>
Date:   Tue Apr 3 23:45:48 2012 -0400

    core: Associate branches with remotes, move trigger runs into checkout
    
    Also add --atomic-retarget option to checkout. This does the magical
    symlink dance to do atomic swaps between trees.

 Makefile-libostree.am                              |    2 +
 gnomeos/gnomeos-clone-qemu.sh                      |    4 +-
 gnomeos/gnomeos-install.sh                         |   17 +-
 gnomeos/gnomeos-update-branches.sh                 |    8 +-
 src/libostree/README.md                            |    1 +
 src/libostree/ostree-sysroot.c                     |  121 ++++++++++++
 src/libostree/ostree-sysroot.h                     |   39 ++++
 src/libostree/ostree.h                             |    1 +
 src/ostree/ostree-pull.c                           |   67 ++++++-
 src/ostree/ot-builtin-checkout.c                   |  194 +++++++++++++++++---
 src/ostree/ot-builtin-remote.c                     |   12 ++
 src/triggers/ostree-run-triggers.c                 |   91 ++-------
 src/triggers/triggers.d/0001ldconfig.trigger       |    9 +-
 src/triggers/triggers.d/0010mime-database.trigger  |    7 +-
 src/triggers/triggers.d/0020dconf.trigger          |    7 +-
 src/triggers/triggers.d/0030glib.trigger           |    7 +-
 src/triggers/triggers.d/0040gdk-pixbuf.trigger     |    8 +-
 src/triggers/triggers.d/0060immodules.trigger      |    7 +-
 src/triggers/triggers.d/0070pango.trigger          |    9 +-
 src/triggers/triggers.d/0080gtk+.trigger           |   21 +-
 .../triggers.d/0090desktop-database.trigger        |    7 +-
 tests/t0000-basic.sh                               |   15 ++-
 22 files changed, 490 insertions(+), 164 deletions(-)
---
diff --git a/Makefile-libostree.am b/Makefile-libostree.am
index 99e85c2..e244393 100644
--- a/Makefile-libostree.am
+++ b/Makefile-libostree.am
@@ -33,6 +33,8 @@ libostree_la_SOURCES = src/libostree/ostree.h \
 	src/libostree/ostree-types.h \
 	src/libostree/ostree-traverse.c \
 	src/libostree/ostree-traverse.h \
+	src/libostree/ostree-sysroot.c \
+	src/libostree/ostree-sysroot.h \
 	$(NULL)
 if USE_LIBARCHIVE
 libostree_la_SOURCES += src/libostree/ostree-libarchive-input-stream.h \
diff --git a/gnomeos/gnomeos-clone-qemu.sh b/gnomeos/gnomeos-clone-qemu.sh
index e87332e..be1bb71 100755
--- a/gnomeos/gnomeos-clone-qemu.sh
+++ b/gnomeos/gnomeos-clone-qemu.sh
@@ -76,10 +76,10 @@ chmod a=rwxt tmp
 if ! test -d ostree; then
     mkdir -p ostree
 
-    $SRCDIR/ostree-setup.sh $(pwd)/ostree
+    $SRCDIR/gnomeos-setup.sh $(pwd)/ostree
 fi
 
-rsync -a -H -v ${WORKDIR}/repo ${WORKDIR}/current ${WORKDIR}/modules ${WORKDIR}/gnomeos-3.4-* ./ostree
+rsync -a -H -v ${WORKDIR}/repo ${WORKDIR}/current ${WORKDIR}/modules ${WORKDIR}/var ${WORKDIR}/gnomeos-3.4-* ./ostree
 
 current_uname=$(uname -r)
 
diff --git a/gnomeos/gnomeos-install.sh b/gnomeos/gnomeos-install.sh
index d66c16f..f99c13f 100755
--- a/gnomeos/gnomeos-install.sh
+++ b/gnomeos/gnomeos-install.sh
@@ -48,16 +48,15 @@ if ! test -d /ostree/repo/objects; then
     $SRCDIR/gnomeos-setup.sh /ostree
 fi
 
-ostree --repo=repo remote add origin http://ostree.gnome.org/repo
-ostree-pull --repo=repo origin gnomeos-3.4-i686-runtime
-ostree-pull --repo=repo origin gnomeos-3.4-i686-devel
+ostree --repo=repo remote add origin http://ostree.gnome.org/repo ${BRANCH_PREFIX}{runtime,devel}
+ostree-pull --repo=repo origin
+for branch in runtime devel; do
+    ostree --repo=repo checkout --atomic-retarget ${BRANCH_PREFIX}${branch}
+done
+ln -sf ${BRANCH_PREFIX}runtime current
 
 uname=$(uname -r)
 
-$SRCDIR/gnomeos-update-branches.sh
-
-cd -
-
 if test -d /etc/grub.d; then
     cp $SRCDIR/15_ostree /etc/grub.d/
 else
@@ -74,7 +73,9 @@ EOF
     exit 1
 fi
 
-cp -ar /lib/modules/${uname} /ostree/modules/${uname}
+if ! test -d /ostree/modules/${uname}; then
+    cp -ar /lib/modules/${uname} /ostree/modules/${uname}
+fi
 
 initrd_name=initramfs-ostree-${uname}.img
 if ! test -f "/boot/${initrd_name}"; then
diff --git a/gnomeos/gnomeos-update-branches.sh b/gnomeos/gnomeos-update-branches.sh
index f00e0c3..4913a99 100755
--- a/gnomeos/gnomeos-update-branches.sh
+++ b/gnomeos/gnomeos-update-branches.sh
@@ -26,13 +26,7 @@ BRANCH_PREFIX="gnomeos-3.4-${ARCH}-"
 test -d repo || exit 1
 
 for branch in runtime devel; do
-    rev=$(ostree --repo=$(pwd)/repo rev-parse ${BRANCH_PREFIX}${branch});
-    if ! test -d ${BRANCH_PREFIX}${branch}-${rev}; then
-        ostree --repo=repo checkout ${rev} ${BRANCH_PREFIX}${branch}-${rev}
-        ostbuild chroot-run-triggers ${BRANCH_PREFIX}${branch}-${rev}
-    fi
-    ln -sf ${BRANCH_PREFIX}${branch}-${rev} ${BRANCH_PREFIX}${branch}-current.new
-    mv ${BRANCH_PREFIX}${branch}-current{.new,}
+    ostree --repo=repo checkout --atomic-retarget ${BRANCH_PREFIX}${branch}
 done
 ln -sf ${BRANCH_PREFIX}runtime-current current.new
 mv current.new current
diff --git a/src/libostree/README.md b/src/libostree/README.md
index 9a76927..35fe48d 100644
--- a/src/libostree/README.md
+++ b/src/libostree/README.md
@@ -47,6 +47,7 @@ MILESTONE 2
 * Add index size to superindex, pack size to index
   - So pull can calculate how much we need to download
 * Split pack files into metadata/data
+* pull: Extract all we can from each packfile one at a time, then delete it
 * Restructure repository so that links can be generated as a cache;
   i.e. objects/raw, pack files are now the canonical
 * For files, checksum combination of metadata variant + raw data 
diff --git a/src/libostree/ostree-sysroot.c b/src/libostree/ostree-sysroot.c
new file mode 100644
index 0000000..cb0ede4
--- /dev/null
+++ b/src/libostree/ostree-sysroot.c
@@ -0,0 +1,121 @@
+/* -*- mode: C; c-file-style: "gnu"; indent-tabs-mode: nil; -*-
+ *
+ * Copyright (C) 2012 Colin Walters <walters verbum org>
+ *
+ * This library is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU Lesser General Public
+ * License as published by the Free Software Foundation; either
+ * version 2 of the License, or (at your option) any later version.
+ *
+ * This library is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * Lesser General Public License for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public
+ * License along with this library; if not, write to the
+ * Free Software Foundation, Inc., 59 Temple Place - Suite 330,
+ * Boston, MA 02111-1307, USA.
+ *
+ * Author: Colin Walters <walters verbum org>
+ */
+
+#include "config.h"
+
+#include <sys/wait.h>
+
+#include "ostree.h"
+#include "otutil.h"
+
+static const char * const sysroot_environ[] = {
+  "HOME=/",
+  "PWD=/",
+  "HOSTNAME=ostreesysroot",
+  "LANG=C",
+  "PATH=/usr/bin:/bin:/usr/sbin:/sbin",
+  "SHELL=/bin/bash",
+  "TERM=vt100",
+  "TMPDIR=/tmp",
+  "TZ=EST5EDT",
+  NULL
+};
+
+const char *const*
+ostree_get_sysroot_environ (void)
+{
+  return (const char *const*)sysroot_environ;
+}
+
+/**
+ * @root: (allow-none): Change to this root; if %NULL, don't chroot
+ *
+ * Triggers are a set of programs to run on a root to regenerate cache
+ * files.  This API call will simply run them against the given root.
+ */
+gboolean
+ostree_run_triggers_in_root (GFile                  *root,
+                             GCancellable           *cancellable,
+                             GError                **error)
+{
+  gboolean ret = FALSE;
+  int estatus;
+  char *rel_triggerdir = NULL;
+  GFile *triggerdir = NULL;
+  GPtrArray *argv = NULL;
+
+  rel_triggerdir = g_build_filename ("usr", "libexec", "ostree", "triggers.d", NULL);
+
+  if (root)
+    triggerdir = g_file_resolve_relative_path (root, rel_triggerdir);
+  else
+    triggerdir = ot_gfile_new_for_path (rel_triggerdir);
+
+  if (g_file_query_exists (triggerdir, cancellable))
+    {
+      argv = g_ptr_array_new ();
+      if (root)
+        {
+          g_ptr_array_add (argv, "linux-user-chroot");
+          g_ptr_array_add (argv, "--unshare-pid");
+          g_ptr_array_add (argv, "--unshare-ipc");
+          /* FIXME - unshare net too */
+          g_ptr_array_add (argv, "--mount-proc");
+          g_ptr_array_add (argv, "/proc");
+          g_ptr_array_add (argv, "--mount-bind");
+          g_ptr_array_add (argv, "/dev");
+          g_ptr_array_add (argv, "/dev");
+          g_ptr_array_add (argv, (char*)ot_gfile_get_path_cached (root));
+        }
+      g_ptr_array_add (argv, "ostree-run-triggers");
+      g_ptr_array_add (argv, NULL);
+
+      if (!g_spawn_sync (NULL, (char**)argv->pdata,
+                         (char**) ostree_get_sysroot_environ (),
+                         G_SPAWN_SEARCH_PATH | G_SPAWN_STDOUT_TO_DEV_NULL,
+                         NULL, NULL, NULL, NULL, &estatus, error))
+        goto out;
+
+      if (WIFEXITED (estatus))
+        {
+          if (WEXITSTATUS (estatus) != 0)
+            {
+              g_set_error (error, G_IO_ERROR, G_IO_ERROR_FAILED,
+                           "Trigger process exited with code %d", (int)WEXITSTATUS (estatus));
+              goto out;
+            }
+        }
+      else
+        {
+          g_set_error (error, G_IO_ERROR, G_IO_ERROR_FAILED,
+                       "Trigger process failed due to signal");
+          goto out;
+        }
+    }
+
+  ret = TRUE;
+ out:
+  g_free (rel_triggerdir);
+  g_clear_object (&triggerdir);
+  ot_clear_ptrarray (&argv);
+  return ret;
+}
diff --git a/src/libostree/ostree-sysroot.h b/src/libostree/ostree-sysroot.h
new file mode 100644
index 0000000..b10246d
--- /dev/null
+++ b/src/libostree/ostree-sysroot.h
@@ -0,0 +1,39 @@
+/* -*- mode: C; c-file-style: "gnu"; indent-tabs-mode: nil; -*-
+ *
+ * Copyright (C) 2011 Colin Walters <walters verbum org>
+ *
+ * This library is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU Lesser General Public
+ * License as published by the Free Software Foundation; either
+ * version 2 of the License, or (at your option) any later version.
+ *
+ * This library is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ * Lesser General Public License for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public
+ * License along with this library; if not, write to the
+ * Free Software Foundation, Inc., 59 Temple Place - Suite 330,
+ * Boston, MA 02111-1307, USA.
+ *
+ * Author: Colin Walters <walters verbum org>
+ */
+
+#ifndef _OSTREE_SYSROOT
+#define _OSTREE_SYSROOT
+
+#include "ostree-core.h"
+#include "ostree-types.h"
+
+G_BEGIN_DECLS
+
+const char *const* ostree_get_sysroot_environ (void);
+
+gboolean ostree_run_triggers_in_root (GFile                  *root,
+                                      GCancellable           *cancellable,
+                                      GError                **error);
+
+G_END_DECLS
+
+#endif
diff --git a/src/libostree/ostree.h b/src/libostree/ostree.h
index ecd8477..571aea9 100644
--- a/src/libostree/ostree.h
+++ b/src/libostree/ostree.h
@@ -27,5 +27,6 @@
 #include <ostree-mutable-tree.h>
 #include <ostree-repo-file.h>
 #include <ostree-traverse.h>
+#include <ostree-sysroot.h>
 
 #endif
diff --git a/src/ostree/ostree-pull.c b/src/ostree/ostree-pull.c
index b3c1f5a..695251f 100644
--- a/src/ostree/ostree-pull.c
+++ b/src/ostree/ostree-pull.c
@@ -977,6 +977,7 @@ ostree_builtin_pull (int argc, char **argv, GFile *repo_path, GError **error)
   GHashTableIter hash_iter;
   gpointer key, value;
   char *branch_rev = NULL;
+  char **configured_branches = NULL;
   int i;
 
   context = g_option_context_new ("REMOTE [BRANCH...] - Download data from remote repository");
@@ -1036,15 +1037,58 @@ ostree_builtin_pull (int argc, char **argv, GFile *repo_path, GError **error)
     }
   else
     {
-      summary_uri = soup_uri_copy (pull_data->base_uri);
-      path = g_build_filename (soup_uri_get_path (summary_uri), "refs", "summary", NULL);
-      soup_uri_set_path (summary_uri, path);
+      GError *temp_error = NULL;
+      gboolean fetch_all_refs;
 
-      if (!fetch_uri_contents_utf8 (pull_data, summary_uri, &summary_data, cancellable, error))
-        goto out;
+      refs_to_fetch = g_hash_table_new_full (g_str_hash, g_str_equal, g_free, g_free);
+      
+      configured_branches = g_key_file_get_string_list (config, key, "branches", NULL, &temp_error);
+      if (configured_branches == NULL && temp_error != NULL)
+        {
+          if (g_error_matches (temp_error, G_KEY_FILE_ERROR, G_KEY_FILE_ERROR_KEY_NOT_FOUND))
+            {
+              g_clear_error (&temp_error);
+              fetch_all_refs = TRUE;
+            }
+          else
+            {
+              g_propagate_error (error, temp_error);
+              goto out;
+            }
+        }
+      else
+        fetch_all_refs = FALSE;
 
-      if (!parse_ref_summary (summary_data, &refs_to_fetch, error))
-        goto out;
+      if (fetch_all_refs)
+        {
+          summary_uri = soup_uri_copy (pull_data->base_uri);
+          path = g_build_filename (soup_uri_get_path (summary_uri), "refs", "summary", NULL);
+          soup_uri_set_path (summary_uri, path);
+          
+          if (!fetch_uri_contents_utf8 (pull_data, summary_uri, &summary_data, cancellable, error))
+            goto out;
+          
+          if (!parse_ref_summary (summary_data, &refs_to_fetch, error))
+            goto out;
+        }
+      else
+        {
+          char **branches_iter = configured_branches;
+
+          if (!*branches_iter)
+            g_print ("No configured branches for remote %s\n", pull_data->remote_name);
+          for (;*branches_iter; branches_iter++)
+            {
+              const char *branch = *branches_iter;
+              char *contents;
+              
+              if (!fetch_ref_contents (pull_data, branch, &contents, cancellable, error))
+                goto out;
+              
+              /* Transfer ownership of contents */
+              g_hash_table_insert (refs_to_fetch, g_strdup (branch), contents);
+            }
+        }
     }
 
   g_hash_table_iter_init (&hash_iter, refs_to_fetch);
@@ -1058,10 +1102,19 @@ ostree_builtin_pull (int argc, char **argv, GFile *repo_path, GError **error)
         goto out;
     }
 
+  g_print ("Cleaning cached pack files...\n");
+
+  if (!ostree_repo_clean_cached_remote_pack_data (pull_data->repo, pull_data->remote_name,
+                                                  cancellable, error))
+    goto out;
+
+  g_print ("Done\n");
+
   ret = TRUE;
  out:
   if (refs_to_fetch)
     g_hash_table_unref (refs_to_fetch);
+  g_strfreev (configured_branches);
   g_free (path);
   g_free (baseurl);
   g_free (summary_data);
diff --git a/src/ostree/ot-builtin-checkout.c b/src/ostree/ot-builtin-checkout.c
index fbdac13..a2a56b0 100644
--- a/src/ostree/ot-builtin-checkout.c
+++ b/src/ostree/ot-builtin-checkout.c
@@ -28,6 +28,8 @@
 #include <glib/gi18n.h>
 
 static gboolean user_mode;
+static gboolean opt_atomic_retarget;
+static gboolean opt_no_triggers;
 static char *subpath;
 static gboolean opt_union;
 
@@ -35,9 +37,85 @@ static GOptionEntry options[] = {
   { "user-mode", 'U', 0, G_OPTION_ARG_NONE, &user_mode, "Do not change file ownership or initialze extended attributes", NULL },
   { "subpath", 0, 0, G_OPTION_ARG_STRING, &subpath, "Checkout sub-directory PATH", "PATH" },
   { "union", 0, 0, G_OPTION_ARG_NONE, &opt_union, "Keep existing directories, overwrite existing files", NULL },
+  { "atomic-retarget", 0, 0, G_OPTION_ARG_NONE, &opt_atomic_retarget, "Make a symbolic link for destination, suffix with checksum", NULL },
+  { "no-triggers", 0, 0, G_OPTION_ARG_NONE, &opt_no_triggers, "Don't run triggers", NULL },
   { NULL }
 };
 
+static gboolean
+atomic_symlink_swap (GFile          *dest,
+                     const char     *target,
+                     GCancellable   *cancellable,
+                     GError        **error)
+{
+  gboolean ret = FALSE;
+  GFile *parent = NULL;
+  char *tmp_name = NULL;
+  GFile *tmp_link = NULL;
+
+  parent = g_file_get_parent (dest);
+  /* HACK - should use randomly generated temporary target name */
+  tmp_name = g_strconcat (ot_gfile_get_basename_cached (dest),
+                          "-tmplink", NULL);
+  tmp_link = g_file_get_child (parent, tmp_name);
+  if (symlink (target, ot_gfile_get_path_cached (tmp_link)) < 0)
+    {
+      ot_util_set_error_from_errno (error, errno);
+      goto out;
+    }
+  if (!ot_gfile_rename (tmp_link, dest, cancellable, error))
+    goto out;
+
+  ret = TRUE;
+ out:
+  g_free (tmp_name);
+  g_clear_object (&parent);
+  g_clear_object (&tmp_link);
+  return ret;
+}
+
+static gboolean
+parse_commit_from_symlink (GFile        *symlink,
+                           char        **out_commit,
+                           GCancellable  *cancellable,
+                           GError       **error)
+{
+  gboolean ret = FALSE;
+  GFileInfo *file_info = NULL;
+  const char *target;
+  const char *last_dash;
+  const char *checksum;
+  char *ret_commit = NULL;
+
+  file_info = g_file_query_info (symlink, OSTREE_GIO_FAST_QUERYINFO,
+                                 G_FILE_QUERY_INFO_NOFOLLOW_SYMLINKS,
+                                 cancellable, error);
+  if (!file_info)
+    goto out;
+
+  target = g_file_info_get_symlink_target (file_info);
+  last_dash = strrchr (target, '-');
+  if (last_dash == NULL)
+    {
+      g_set_error (error, G_IO_ERROR, G_IO_ERROR_FAILED,
+                   "Invalid existing symlink target; no trailing dash");
+      goto out;
+    }
+  checksum = last_dash + 1;
+
+  if (!ostree_validate_structureof_checksum_string (checksum, error))
+    goto out;
+  
+  ret_commit = g_strdup (checksum);
+
+  ret = TRUE;
+  ot_transfer_out_value (out_commit, &ret_commit);
+ out:
+  g_free (ret_commit);
+  g_clear_object (&file_info);
+  return ret;
+}
+
 gboolean
 ostree_builtin_checkout (int argc, char **argv, GFile *repo_path, GError **error)
 {
@@ -46,12 +124,19 @@ ostree_builtin_checkout (int argc, char **argv, GFile *repo_path, GError **error
   gboolean ret = FALSE;
   OstreeRepo *repo = NULL;
   const char *commit;
+  char *existing_commit = NULL;
   char *resolved_commit = NULL;
   const char *destination;
+  char *suffixed_destination = NULL;
+  char *tmp_destination = NULL;
   OstreeRepoFile *root = NULL;
   OstreeRepoFile *subtree = NULL;
   GFileInfo *file_info = NULL;
-  GFile *destf = NULL;
+  GFileInfo *symlink_file_info = NULL;
+  GFile *checkout_target = NULL;
+  GFile *checkout_target_tmp = NULL;
+  GFile *symlink_target = NULL;
+  gboolean skip_checkout;
 
   context = g_option_context_new ("COMMIT DESTINATION - Check out a commit into a filesystem tree");
   g_option_context_add_main_entries (context, options, NULL);
@@ -63,57 +148,120 @@ ostree_builtin_checkout (int argc, char **argv, GFile *repo_path, GError **error
   if (!ostree_repo_check (repo, error))
     goto out;
 
-  if (argc < 3)
+  if (argc < 2)
     {
       gchar *help = g_option_context_get_help (context, TRUE, NULL);
       g_printerr ("%s\n", help);
       g_free (help);
       g_set_error_literal (error, G_IO_ERROR, G_IO_ERROR_FAILED,
-                           "COMMIT and DESTINATION must be specified");
+                           "COMMIT must be specified");
       goto out;
     }
   
   commit = argv[1];
-  destination = argv[2];
-
-  destf = ot_gfile_new_for_path (destination);
+  if (argc < 3)
+    destination = commit;
+  else
+    destination = argv[2];
 
   if (!ostree_repo_resolve_rev (repo, commit, FALSE, &resolved_commit, error))
     goto out;
 
-  root = (OstreeRepoFile*)ostree_repo_file_new_root (repo, resolved_commit);
-  if (!ostree_repo_file_ensure_resolved (root, error))
-    goto out;
-
-  if (subpath)
+  if (opt_atomic_retarget)
     {
-      subtree = (OstreeRepoFile*)g_file_resolve_relative_path ((GFile*)root, subpath);
+      GError *temp_error = NULL;
+
+      suffixed_destination = g_strconcat (destination, "-", resolved_commit, NULL);
+      checkout_target = ot_gfile_new_for_path (suffixed_destination);
+      tmp_destination = g_strconcat (suffixed_destination, ".tmp", NULL);
+      checkout_target_tmp = ot_gfile_new_for_path (tmp_destination);
+      symlink_target = ot_gfile_new_for_path (destination);
+
+      if (!parse_commit_from_symlink (symlink_target, &existing_commit,
+                                      cancellable, &temp_error))
+        {
+          if (g_error_matches (temp_error, G_IO_ERROR, G_IO_ERROR_NOT_FOUND))
+            {
+              skip_checkout = FALSE;
+              g_clear_error (&temp_error);
+            }
+          else
+            {
+              g_propagate_error (error, temp_error);
+              goto out;
+            }
+        }
+      else
+        {
+          skip_checkout = strcmp (existing_commit, resolved_commit) == 0;
+        }
     }
   else
     {
-      subtree = g_object_ref (root);
+      checkout_target = ot_gfile_new_for_path (destination);
+      skip_checkout = FALSE;
     }
 
-  file_info = g_file_query_info ((GFile*)subtree, OSTREE_GIO_FAST_QUERYINFO,
-                                 G_FILE_QUERY_INFO_NOFOLLOW_SYMLINKS,
-                                 cancellable, error);
-  if (!file_info)
-    goto out;
+  if (!skip_checkout)
+    {
+      root = (OstreeRepoFile*)ostree_repo_file_new_root (repo, resolved_commit);
+      if (!ostree_repo_file_ensure_resolved (root, error))
+        goto out;
 
-  if (!ostree_repo_checkout_tree (repo, user_mode ? OSTREE_REPO_CHECKOUT_MODE_USER : 0,
-                                  opt_union ? OSTREE_REPO_CHECKOUT_OVERWRITE_UNION_FILES : 0,
-                                  destf, subtree, file_info, cancellable, error))
-    goto out;
+      if (subpath)
+        {
+          subtree = (OstreeRepoFile*)g_file_resolve_relative_path ((GFile*)root, subpath);
+        }
+      else
+        {
+          subtree = g_object_ref (root);
+        }
+
+      file_info = g_file_query_info ((GFile*)subtree, OSTREE_GIO_FAST_QUERYINFO,
+                                     G_FILE_QUERY_INFO_NOFOLLOW_SYMLINKS,
+                                     cancellable, error);
+      if (!file_info)
+        goto out;
+
+      if (!ostree_repo_checkout_tree (repo, user_mode ? OSTREE_REPO_CHECKOUT_MODE_USER : 0,
+                                      opt_union ? OSTREE_REPO_CHECKOUT_OVERWRITE_UNION_FILES : 0,
+                                      checkout_target_tmp ? checkout_target_tmp : checkout_target,
+                                      subtree, file_info, cancellable, error))
+        goto out;
+
+      if (!opt_no_triggers)
+        {
+          if (!ostree_run_triggers_in_root (checkout_target_tmp ? checkout_target_tmp : checkout_target,
+                                            cancellable, error))
+            goto out;
+        }
+
+      if (opt_atomic_retarget)
+        {
+          if (!ot_gfile_rename (checkout_target_tmp, checkout_target, cancellable, error))
+            goto out;
+          if (!atomic_symlink_swap (symlink_target,
+                                    ot_gfile_get_basename_cached (checkout_target),
+                                    cancellable, error))
+            goto out;
+        }
+    }
 
   ret = TRUE;
  out:
+  g_free (suffixed_destination);
+  g_free (tmp_destination);
   g_free (resolved_commit);
+  g_free (existing_commit);
+  g_clear_object (&symlink_target);
+  g_clear_object (&checkout_target_tmp);
+  g_clear_object (&checkout_target);
   if (context)
     g_option_context_free (context);
   g_clear_object (&repo);
-  g_clear_object (&destf);
   g_clear_object (&root);
   g_clear_object (&subtree);
   g_clear_object (&file_info);
+  g_clear_object (&symlink_file_info);
   return ret;
 }
diff --git a/src/ostree/ot-builtin-remote.c b/src/ostree/ot-builtin-remote.c
index 6ec3346..8cb47e2 100644
--- a/src/ostree/ot-builtin-remote.c
+++ b/src/ostree/ot-builtin-remote.c
@@ -49,6 +49,8 @@ ostree_builtin_remote (int argc, char **argv, GFile *repo_path, GError **error)
   OstreeRepo *repo = NULL;
   const char *op;
   GKeyFile *config = NULL;
+  GPtrArray *branches = NULL;
+  guint i;
 
   context = g_option_context_new ("OPERATION [args] - Control remote repository configuration");
   g_option_context_add_main_entries (context, options, NULL);
@@ -78,8 +80,17 @@ ostree_builtin_remote (int argc, char **argv, GFile *repo_path, GError **error)
           usage_error (context, "NAME and URL must be specified", error);
           goto out;
         }
+
+      branches = g_ptr_array_new ();
+      for (i = 4; i < argc; i++)
+        g_ptr_array_add (branches, argv[i]);
+
       key = g_strdup_printf ("remote \"%s\"", argv[2]);
       g_key_file_set_string (config, key, "url", argv[3]);
+      if (branches->len > 0)
+        g_key_file_set_string_list (config, key, "branches",
+                                    (const char *const *)branches->pdata,
+                                    branches->len);
       g_free (key);
     }
   else
@@ -93,6 +104,7 @@ ostree_builtin_remote (int argc, char **argv, GFile *repo_path, GError **error)
  
   ret = TRUE;
  out:
+  ot_clear_ptrarray (&branches);
   if (context)
     g_option_context_free (context);
   if (config)
diff --git a/src/triggers/ostree-run-triggers.c b/src/triggers/ostree-run-triggers.c
index e533915..6662c2e 100644
--- a/src/triggers/ostree-run-triggers.c
+++ b/src/triggers/ostree-run-triggers.c
@@ -25,15 +25,16 @@
 #include <gio/gio.h>
 #include <string.h>
 
-static gboolean quiet;
+static gboolean verbose;
 
 static GOptionEntry options[] = {
-  { "quiet", 'q', 0, G_OPTION_ARG_NONE, &quiet, "Don't display informational messages", NULL },
+  { "verbose", 'v', 0, G_OPTION_ARG_NONE, &verbose, "Display informational messages", NULL },
   { NULL }
 };
 
 static gboolean
 run_trigger (const char     *path,
+             GCancellable   *cancellable,
              GError        **error)
 {
   gboolean ret = FALSE;
@@ -47,8 +48,9 @@ run_trigger (const char     *path,
   
   g_ptr_array_add (args, (char*)path);
   g_ptr_array_add (args, NULL);
-      
-  g_print ("Running trigger: %s\n", path);
+
+  if (verbose)
+    g_print ("Running trigger: %s\n", path);
   if (!g_spawn_sync (NULL,
                      (char**)args->pdata,
                      NULL,
@@ -69,65 +71,6 @@ run_trigger (const char     *path,
   return ret;
 }
 
-static gboolean
-check_trigger (GFile          *trigger,
-               GError        **error)
-{
-  gboolean ret = FALSE;
-  GInputStream *instream = NULL;
-  GDataInputStream *datain = NULL;
-  GError *temp_error = NULL;
-  char *line;
-  gsize len;
-  char *ifexecutable_path = NULL;
-  char *trigger_path = NULL;
-  gboolean matched = TRUE;
-
-  trigger_path = g_file_get_path (trigger);
-
-  instream = (GInputStream*)g_file_read (trigger, NULL, error);
-  if (!instream)
-    goto out;
-  datain = g_data_input_stream_new (instream);
-
-  while ((line = g_data_input_stream_read_line (datain, &len, NULL, &temp_error)) != NULL)
-    {
-      if (g_str_has_prefix (line, "# IfExecutable: "))
-        {
-          char *executable = g_strdup (line + strlen ("# IfExecutable: "));
-          g_strchomp (executable);
-          g_free (ifexecutable_path);
-          ifexecutable_path = g_find_program_in_path (executable);
-          g_free (executable);
-          if (!ifexecutable_path)
-            {
-              matched = FALSE;
-              break;
-            }
-          break;
-        }
-      g_free (line);
-    }
-  if (line == NULL && temp_error != NULL)
-    {
-      g_propagate_error (error, temp_error);
-      goto out;
-    }
-  if (matched)
-    {
-      if (!run_trigger (trigger_path, error))
-        goto out;
-    }
-  
-  ret = TRUE;
- out:
-  g_free (trigger_path);
-  g_free (ifexecutable_path);
-  g_clear_object (&instream);
-  g_clear_object (&datain);
-  return ret;
-}
-
 static int
 compare_files_by_basename (gconstpointer  ap,
                            gconstpointer  bp)
@@ -147,6 +90,7 @@ compare_files_by_basename (gconstpointer  ap,
 
 static gboolean
 get_sorted_triggers (GPtrArray       **out_triggers,
+                     GCancellable     *cancellable,
                      GError          **error)
 {
   gboolean ret = FALSE;
@@ -164,12 +108,12 @@ get_sorted_triggers (GPtrArray       **out_triggers,
 
   enumerator = g_file_enumerate_children (triggerdir, "standard::name,standard::type", 
                                           G_FILE_QUERY_INFO_NOFOLLOW_SYMLINKS,
-                                          NULL, 
+                                          cancellable, 
                                           error);
   if (!enumerator)
     goto out;
 
-  while ((file_info = g_file_enumerator_next_file (enumerator, NULL, &temp_error)) != NULL)
+  while ((file_info = g_file_enumerator_next_file (enumerator, cancellable, &temp_error)) != NULL)
     {
       const char *name;
       guint32 type;
@@ -214,25 +158,31 @@ get_sorted_triggers (GPtrArray       **out_triggers,
 }
 
 gboolean
-run_triggers (GError        **error)
+run_triggers (GCancellable   *cancellable,
+              GError        **error)
 {
   gboolean ret = FALSE;
   int i;
   GPtrArray *triggers = NULL;
+  char *path = NULL;
 
-  if (!get_sorted_triggers (&triggers, error))
+  if (!get_sorted_triggers (&triggers, cancellable, error))
     goto out;
 
   for (i = 0; i < triggers->len; i++)
     {
-      GFile *trigger = triggers->pdata[i];
+      GFile *trigger_path = triggers->pdata[i];
+
+      g_free (path);
+      path = g_file_get_path (trigger_path);
 
-      if (!check_trigger (trigger, error))
+      if (!run_trigger (path, cancellable, error))
         goto out;
     }
 
   ret = TRUE;
  out:
+  g_free (path);
   if (triggers)
     g_ptr_array_unref (triggers);
   return ret;
@@ -245,6 +195,7 @@ main (int    argc,
   GOptionContext *context;
   GError *real_error = NULL;
   GError **error = &real_error;
+  GCancellable *cancellable = NULL;
   gboolean ret = FALSE;
 
   g_type_init ();
@@ -255,7 +206,7 @@ main (int    argc,
   if (!g_option_context_parse (context, &argc, &argv, error))
     goto out;
 
-  if (!run_triggers (error))
+  if (!run_triggers (cancellable, error))
     goto out;
 
   ret = TRUE;
diff --git a/src/triggers/triggers.d/0001ldconfig.trigger b/src/triggers/triggers.d/0001ldconfig.trigger
index b412603..daed471 100755
--- a/src/triggers/triggers.d/0001ldconfig.trigger
+++ b/src/triggers/triggers.d/0001ldconfig.trigger
@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/bin/bash
 # Post-installation hook for shared libraries.  -*- mode: sh -*-
 #
 # Written by Colin Walters <walters verbum org>
@@ -18,7 +18,6 @@
 # Free Software Foundation, Inc., 59 Temple Place - Suite 330,
 # Boston, MA 02111-1307, USA.
 
-# IfExecutable: ldconfig
-# REMatch: /lib.*/\.so.*
-
-ldconfig -r .
+if test -x "$(which ldconfig 2>/dev/null)"; then
+    exec ldconfig
+fi
diff --git a/src/triggers/triggers.d/0010mime-database.trigger b/src/triggers/triggers.d/0010mime-database.trigger
index bfe301f..e99cf2e 100755
--- a/src/triggers/triggers.d/0010mime-database.trigger
+++ b/src/triggers/triggers.d/0010mime-database.trigger
@@ -18,7 +18,6 @@
 # Free Software Foundation, Inc., 59 Temple Place - Suite 330,
 # Boston, MA 02111-1307, USA.
 
-# IfExecutable: update-mime-database
-# REMatch: /mime/packages/.*\.xml
-
-exec update-mime-database ./usr/share/mime
+if test -x "$(which update-mime-database 2>/dev/null)"; then
+    exec update-mime-database /usr/share/mime
+fi
diff --git a/src/triggers/triggers.d/0020dconf.trigger b/src/triggers/triggers.d/0020dconf.trigger
index 335364c..620d4e0 100755
--- a/src/triggers/triggers.d/0020dconf.trigger
+++ b/src/triggers/triggers.d/0020dconf.trigger
@@ -18,7 +18,6 @@
 # Free Software Foundation, Inc., 59 Temple Place - Suite 330,
 # Boston, MA 02111-1307, USA.
 
-# IfExecutable: dconf
-# LiteralMatch: /etc/dconf/*
-
-exec dconf update
+if test -x "$(which dconf 2>/dev/null)"; then
+    exec dconf update
+fi
diff --git a/src/triggers/triggers.d/0030glib.trigger b/src/triggers/triggers.d/0030glib.trigger
index 734b672..8c8bf50 100755
--- a/src/triggers/triggers.d/0030glib.trigger
+++ b/src/triggers/triggers.d/0030glib.trigger
@@ -18,7 +18,6 @@
 # Free Software Foundation, Inc., 59 Temple Place - Suite 330,
 # Boston, MA 02111-1307, USA.
 
-# IfExecutable: glib-compile-schemas
-# LiteralMatch: /share/glib-2.0/schemas/
-
-exec glib-compile-schemas ./usr/share/glib-2.0/schemas
+if test -x "$(which glib-compile-schemas 2>/dev/null)"; then
+    exec glib-compile-schemas /usr/share/glib-2.0/schemas
+fi
diff --git a/src/triggers/triggers.d/0040gdk-pixbuf.trigger b/src/triggers/triggers.d/0040gdk-pixbuf.trigger
index 07c84b0..989d08b 100755
--- a/src/triggers/triggers.d/0040gdk-pixbuf.trigger
+++ b/src/triggers/triggers.d/0040gdk-pixbuf.trigger
@@ -19,8 +19,6 @@
 # Free Software Foundation, Inc., 59 Temple Place - Suite 330,
 # Boston, MA 02111-1307, USA.
 
-# IfExecutable: gdk-pixbuf-query-loaders
-# RequiresChroot: true
-# LiteralMatch: /gdk-pixbuf-2.0/2.10.0/loaders/
-
-exec gdk-pixbuf-query-loaders --update-cache
+if test -x "$(which gdk-pixbuf-query-loaders 2>/dev/null)"; then
+    exec gdk-pixbuf-query-loaders --update-cache
+fi
diff --git a/src/triggers/triggers.d/0060immodules.trigger b/src/triggers/triggers.d/0060immodules.trigger
index daad42a..b9738ee 100755
--- a/src/triggers/triggers.d/0060immodules.trigger
+++ b/src/triggers/triggers.d/0060immodules.trigger
@@ -18,7 +18,6 @@
 # Free Software Foundation, Inc., 59 Temple Place - Suite 330,
 # Boston, MA 02111-1307, USA.
 
-# IfExecutable: gtk-query-immodules-3.0
-# REMatch: /lib.*/gtk-3\.0/3\.0\.0/immodules/.*\.so
-
-gtk-query-immodules-3.0 --update-cache
+if test -x "$(which gtk-query-immodules-3.0 2>/dev/null)"; then
+    exec gtk-query-immodules-3.0 --update-cache
+fi
diff --git a/src/triggers/triggers.d/0070pango.trigger b/src/triggers/triggers.d/0070pango.trigger
index 6993546..ad41e75 100755
--- a/src/triggers/triggers.d/0070pango.trigger
+++ b/src/triggers/triggers.d/0070pango.trigger
@@ -19,8 +19,7 @@
 # Free Software Foundation, Inc., 59 Temple Place - Suite 330,
 # Boston, MA 02111-1307, USA.
 
-# IfExecutable: pango-querymodules
-# REMatch: /lib.*/pango/.*/modules/.*\.so
-
-DEST=/etc/pango/pango.modules
-pango-querymodules --system > ${DEST}.tmp && mv ${DEST}.tmp ${DEST}
+if test -x "$(which pango-querymodules 2>/dev/null)"; then
+    DEST=/etc/pango/pango.modules
+    pango-querymodules --system > ${DEST}.tmp && mv ${DEST}.tmp ${DEST}
+fi
diff --git a/src/triggers/triggers.d/0080gtk+.trigger b/src/triggers/triggers.d/0080gtk+.trigger
index 26b313f..85b9e79 100755
--- a/src/triggers/triggers.d/0080gtk+.trigger
+++ b/src/triggers/triggers.d/0080gtk+.trigger
@@ -18,14 +18,13 @@
 # Free Software Foundation, Inc., 59 Temple Place - Suite 330,
 # Boston, MA 02111-1307, USA.
 
-# IfExecutable: gtk-update-icon-cache
-# LiteralMatch: /share/icons/
-
-for dir in ./usr/share/icons/*; do
-  if test -f $dir/index.theme; then
-    if ! gtk-update-icon-cache --quiet $dir; then
-	echo "Failed to run gtk-update-icon-cache for $dir"
-	exit 1
-    fi
-  fi
-done
+if test -x "$(which gtk-update-icon-cache 2>/dev/null)"; then
+    for dir in /usr/share/icons/*; do
+	if test -f $dir/index.theme; then
+	    if ! gtk-update-icon-cache --quiet $dir; then
+		echo "Failed to run gtk-update-icon-cache for $dir"
+		exit 1
+	    fi
+	fi
+    done
+fi
diff --git a/src/triggers/triggers.d/0090desktop-database.trigger b/src/triggers/triggers.d/0090desktop-database.trigger
index 017d27c..25da1e9 100755
--- a/src/triggers/triggers.d/0090desktop-database.trigger
+++ b/src/triggers/triggers.d/0090desktop-database.trigger
@@ -18,7 +18,6 @@
 # Free Software Foundation, Inc., 59 Temple Place - Suite 330,
 # Boston, MA 02111-1307, USA.
 
-# IfExecutable: update-desktop-database
-# REMatch: /share/applications/.*/.*\.desktop
-
-exec update-desktop-database -q ./usr/share/applications
+if test -x "$(which update-desktop-database 2>/dev/null)"; then
+    exec update-desktop-database -q /usr/share/applications
+fi
diff --git a/tests/t0000-basic.sh b/tests/t0000-basic.sh
index 2d55e20..6cb79ab 100755
--- a/tests/t0000-basic.sh
+++ b/tests/t0000-basic.sh
@@ -19,7 +19,7 @@
 
 set -e
 
-echo "1..28"
+echo "1..30"
 
 . libtest.sh
 
@@ -206,3 +206,16 @@ cmp union-files-count{,.new}
 cd checkout-test2-union
 assert_file_has_content ./yet/another/tree/green "leaf"
 echo "ok checkout union 1"
+
+cd ${test_tmpdir}
+$OSTREE checkout --atomic-retarget test2 checkout-atomic-test2
+cd checkout-atomic-test2
+assert_file_has_content ./yet/another/tree/green "leaf"
+echo "ok checkout atomic"
+
+cd ${test_tmpdir}
+rm -rf test2
+$OSTREE checkout --atomic-retarget test2
+cd test2
+assert_file_has_content ./yet/another/tree/green "leaf"
+echo "ok checkout short form"



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