pybliographer r1285 - trunk/tests
- From: fredgo svn gnome org
- To: svn-commits-list gnome org
- Subject: pybliographer r1285 - trunk/tests
- Date: Sun, 30 Nov 2008 14:13:35 +0000 (UTC)
Author: fredgo
Date: Sun Nov 30 14:13:34 2008
New Revision: 1285
URL: http://svn.gnome.org/viewvc/pybliographer?rev=1285&view=rev
Log:
Revision: gobry pybliographer org--2007/pyblio--stable--1.2--patch-25
Creator: Frederic Gobry <gobry pybliographer org>
merged Zoltan's fixes for tests
Patches applied:
* kota pybliographer org--2007/pyblio--stable--1.2--patch-14
merged patch-22..24 from Frederic
* kota pybliographer org--2007/pyblio--stable--1.2--patch-15
updated tests
Modified:
trunk/tests/Makefile.am
trunk/tests/format.html
trunk/tests/format.latex
trunk/tests/format.raw
trunk/tests/format.text
trunk/tests/medline.bib
trunk/tests/pubmed.bib
Modified: trunk/tests/Makefile.am
==============================================================================
--- trunk/tests/Makefile.am (original)
+++ trunk/tests/Makefile.am Sun Nov 30 14:13:34 2008
@@ -35,36 +35,45 @@
bibtex.bib \
bibtex.text \
broken.bib \
+ compact \
compact.aux \
compact.bib \
+ convert \
document.aux \
document.bbl.ref \
document.tex \
+ format \
+ format2 \
+ format2.html \
+ format2.latex \
+ format2.raw \
+ format2.text \
+ format2.textau \
+ format2.textnum \
format.html \
format.latex \
format.py \
format.raw \
format.text \
+ import-export \
import-export.py \
- reorder.py \
- medline.med \
medline.bib \
+ medline.med \
+ ovid.ovid \
preamble.bib \
- pubmed.med \
pubmed.bib \
- ovid.ovid \
- refer.refer \
- format2.html \
- format2.raw \
- format2.latex \
- format2.text \
- format2.textau \
- format2.textnum \
+ pubmed.med \
+ pybformat \
+ pybtex \
+ pybtext \
pybtext.abbrvau \
pybtext.abbrvbib \
pybtext.abbrvnum \
pybtext.Alpha \
pybtext.bib \
pybtext.txt \
- testing.sh
+ refer.refer \
+ reorder.py \
+ testing.sh \
+ test-pybcheck
Modified: trunk/tests/format.html
==============================================================================
--- trunk/tests/format.html (original)
+++ trunk/tests/format.html Sun Nov 30 14:13:34 2008
@@ -1,13 +1,13 @@
<dl>
-<dt>[BML+90]<dd>Byrn, R.A., J. Mordenti, C. Lucas, D. Smith, S.A. Marsters, J.S. Johnson, P. Cossum, S.M. Chamow, F.M. Wurm, T. Gregory and et al. Biological properties of a CD4 immunoadhesin.. <em>Nature</em>, 344(6267):667-70, 1990.
-<dt>[CIF+99]<dd>Crosignani, A., P. Invernizzi, R. Ferrari, A. Manzin, S. Bruno, M. Zuin, F.B. Bianchi and M. Podda. Exacerbation of chronic hepatitis D during interferon alpha administration.. <em>Ital J Gastroenterol Hepatol</em>, 31(1):66-9, 1999.
-<dt>[FBC+92]<dd>Fusconi, M., H. Baum, A. Caselli, F. Cassani, G. Ballardini, M. Lenzi, U. Volta, D. Zauli and F.B. Bianchi. Demonstration of peptide-specific and cross-reactive epitopes in proteins reacting with antimitochondrial antibodies of primary biliary cirrhosis.. <em>J Hepatol</em>, 15(1-2):162-9, 1992.
+<dt>[BML+90]<dd>Byrn, R. A., J. Mordenti, C. Lucas, D. Smith, S. A. Marsters, J. S. Johnson, P. Cossum, S. M. Chamow, F. M. Wurm, T. Gregory and et al. Biological properties of a CD4 immunoadhesin.. <em>Nature</em>, 344(6267):667-70, 1990.
+<dt>[CIF+99]<dd>Crosignani, A., P. Invernizzi, R. Ferrari, A. Manzin, S. Bruno, M. Zuin, F. B. Bianchi and M. Podda. Exacerbation of chronic hepatitis D during interferon alpha administration.. <em>Ital J Gastroenterol Hepatol</em>, 31(1):66-9, 1999.
+<dt>[FBC+92]<dd>Fusconi, M., H. Baum, A. Caselli, F. Cassani, G. Ballardini, M. Lenzi, U. Volta, D. Zauli and F. B. Bianchi. Demonstration of peptide-specific and cross-reactive epitopes in proteins reacting with antimitochondrial antibodies of primary biliary cirrhosis.. <em>J Hepatol</em>, 15(1-2):162-9, 1992.
<dt>[Gob]<dd>Gobry, F. cECI est un TÅSTÉOéO Günther.
-<dt>[KMH+99]<dd>Kerkar, N., Y. Ma, M. Hussain, L. Muratori, C. Targett, R. Williams, F.B. Bianchi, G. Mieli-Vergani and D. Vergani. A novel assay for detecting antibodies to cytochrome P4502D6, the molecular target of liver kidney microsomal antibody type 1.. <em>J Immunol Methods</em>, 223(2):227-35, 1999.
-<dt>[LBS+99]<dd>Lenzi, M., S. Bellentani, G. Saccoccio, P. Muratori, F. Masutti, L. Muratori, F. Cassani, F.B. Bianchi and C. Tiribelli. Prevalence of non-organ-specific autoantibodies and chronic liver disease in the general population: a nested case-control study of the Dionysos cohort [see comments]. <em>Gut</em>, 45(3):435-41, 1999.
-<dt>[MCM+98]<dd>Muratori, L., M. Cataleta, P. Muratori, M. Lenzi and F.B. Bianchi. Liver/kidney microsomal antibody type 1 and liver cytosol antibody type 1 concentrations in type 2 autoimmune hepatitis.. <em>Gut</em>, 42(5):721-6, 1998.
-<dt>[VDF+98a]<dd>Volta, U., L. De Franceschi, F. Lari, N. Molinaro, M. Zoli and F.B. Bianchi. Coeliac disease hidden by cryptogenic hypertransaminasaemia.. <em>Lancet</em>, 352(9121):26-9, 1998.
-<dt>[VDF+98b]<dd>Volta, U., L. De Franceschi, N. Molinaro, F. Cassani, L. Muratori, M. Lenzi, F.B. Bianchi and A.J. Czaja. Frequency and significance of anti-gliadin and anti-endomysial antibodies in autoimmune hepatitis.. <em>Dig Dis Sci</em>, 43(10):2190-5, 1998.
-<dt>[ZCB99]<dd>Zauli, D., F. Cassani and F.B. Bianchi. Auto-antibodies in hepatitis C.. <em>Biomed Pharmacother</em>, 53(5-6):234-41, 1999.
+<dt>[KMH+99]<dd>Kerkar, N., Y. Ma, M. Hussain, L. Muratori, C. Targett, R. Williams, F. B. Bianchi, G. Mieli-Vergani and D. Vergani. A novel assay for detecting antibodies to cytochrome P4502D6, the molecular target of liver kidney microsomal antibody type 1.. <em>J Immunol Methods</em>, 223(2):227-35, 1999.
+<dt>[LBS+99]<dd>Lenzi, M., S. Bellentani, G. Saccoccio, P. Muratori, F. Masutti, L. Muratori, F. Cassani, F. B. Bianchi and C. Tiribelli. Prevalence of non-organ-specific autoantibodies and chronic liver disease in the general population: a nested case-control study of the Dionysos cohort [see comments]. <em>Gut</em>, 45(3):435-41, 1999.
+<dt>[MCM+98]<dd>Muratori, L., M. Cataleta, P. Muratori, M. Lenzi and F. B. Bianchi. Liver/kidney microsomal antibody type 1 and liver cytosol antibody type 1 concentrations in type 2 autoimmune hepatitis.. <em>Gut</em>, 42(5):721-6, 1998.
+<dt>[VDF+98a]<dd>Volta, U., L. De Franceschi, F. Lari, N. Molinaro, M. Zoli and F. B. Bianchi. Coeliac disease hidden by cryptogenic hypertransaminasaemia.. <em>Lancet</em>, 352(9121):26-9, 1998.
+<dt>[VDF+98b]<dd>Volta, U., L. De Franceschi, N. Molinaro, F. Cassani, L. Muratori, M. Lenzi, F. B. Bianchi and A. J. Czaja. Frequency and significance of anti-gliadin and anti-endomysial antibodies in autoimmune hepatitis.. <em>Dig Dis Sci</em>, 43(10):2190-5, 1998.
+<dt>[ZCB99]<dd>Zauli, D., F. Cassani and F. B. Bianchi. Auto-antibodies in hepatitis C.. <em>Biomed Pharmacother</em>, 53(5-6):234-41, 1999.
</dl>
<p align="right"><small>Generated by Pybliographer</small></p>
Modified: trunk/tests/format.latex
==============================================================================
--- trunk/tests/format.latex (original)
+++ trunk/tests/format.latex Sun Nov 30 14:13:34 2008
@@ -1,16 +1,16 @@
\begin{thebibliography}{KEY99}
\bibitem[BML+90]{BML+90}
-Byrn, R.A., J. Mordenti, C. Lucas, D. Smith, S.A. Marsters, J.S. Johnson, P. Cossum, S.M. Chamow, F.M. Wurm, T. Gregory and et al.
+Byrn, R. A., J. Mordenti, C. Lucas, D. Smith, S. A. Marsters, J. S. Johnson, P. Cossum, S. M. Chamow, F. M. Wurm, T. Gregory and et al.
\newblock Biological properties of a CD4 immunoadhesin..
\newblock {\em Nature}, 344(6267):667-70, 1990.
\newblock
\bibitem[CIF+99]{CIF+99}
-Crosignani, A., P. Invernizzi, R. Ferrari, A. Manzin, S. Bruno, M. Zuin, F.B. Bianchi and M. Podda.
+Crosignani, A., P. Invernizzi, R. Ferrari, A. Manzin, S. Bruno, M. Zuin, F. B. Bianchi and M. Podda.
\newblock Exacerbation of chronic hepatitis D during interferon alpha administration..
\newblock {\em Ital J Gastroenterol Hepatol}, 31(1):66-9, 1999.
\newblock
\bibitem[FBC+92]{FBC+92}
-Fusconi, M., H. Baum, A. Caselli, F. Cassani, G. Ballardini, M. Lenzi, U. Volta, D. Zauli and F.B. Bianchi.
+Fusconi, M., H. Baum, A. Caselli, F. Cassani, G. Ballardini, M. Lenzi, U. Volta, D. Zauli and F. B. Bianchi.
\newblock Demonstration of peptide-specific and cross-reactive epitopes in proteins reacting with antimitochondrial antibodies of primary biliary cirrhosis..
\newblock {\em J Hepatol}, 15(1-2):162-9, 1992.
\newblock
@@ -19,32 +19,32 @@
\newblock cECI est un T\AA{}ST\'EO\'eO G\"unther.
\newblock
\bibitem[KMH+99]{KMH+99}
-Kerkar, N., Y. Ma, M. Hussain, L. Muratori, C. Targett, R. Williams, F.B. Bianchi, G. Mieli-Vergani and D. Vergani.
+Kerkar, N., Y. Ma, M. Hussain, L. Muratori, C. Targett, R. Williams, F. B. Bianchi, G. Mieli-Vergani and D. Vergani.
\newblock A novel assay for detecting antibodies to cytochrome P4502D6, the molecular target of liver kidney microsomal antibody type 1..
\newblock {\em J Immunol Methods}, 223(2):227-35, 1999.
\newblock
\bibitem[LBS+99]{LBS+99}
-Lenzi, M., S. Bellentani, G. Saccoccio, P. Muratori, F. Masutti, L. Muratori, F. Cassani, F.B. Bianchi and C. Tiribelli.
+Lenzi, M., S. Bellentani, G. Saccoccio, P. Muratori, F. Masutti, L. Muratori, F. Cassani, F. B. Bianchi and C. Tiribelli.
\newblock Prevalence of non-organ-specific autoantibodies and chronic liver disease in the general population: a nested case-control study of the Dionysos cohort [see comments].
\newblock {\em Gut}, 45(3):435-41, 1999.
\newblock
\bibitem[MCM+98]{MCM+98}
-Muratori, L., M. Cataleta, P. Muratori, M. Lenzi and F.B. Bianchi.
+Muratori, L., M. Cataleta, P. Muratori, M. Lenzi and F. B. Bianchi.
\newblock Liver/kidney microsomal antibody type 1 and liver cytosol antibody type 1 concentrations in type 2 autoimmune hepatitis..
\newblock {\em Gut}, 42(5):721-6, 1998.
\newblock
\bibitem[VDF+98a]{VDF+98}
-Volta, U., L. De Franceschi, F. Lari, N. Molinaro, M. Zoli and F.B. Bianchi.
+Volta, U., L. De Franceschi, F. Lari, N. Molinaro, M. Zoli and F. B. Bianchi.
\newblock Coeliac disease hidden by cryptogenic hypertransaminasaemia..
\newblock {\em Lancet}, 352(9121):26-9, 1998.
\newblock
\bibitem[VDF+98b]{VDF+98b}
-Volta, U., L. De Franceschi, N. Molinaro, F. Cassani, L. Muratori, M. Lenzi, F.B. Bianchi and A.J. Czaja.
+Volta, U., L. De Franceschi, N. Molinaro, F. Cassani, L. Muratori, M. Lenzi, F. B. Bianchi and A. J. Czaja.
\newblock Frequency and significance of anti-gliadin and anti-endomysial antibodies in autoimmune hepatitis..
\newblock {\em Dig Dis Sci}, 43(10):2190-5, 1998.
\newblock
\bibitem[ZCB99]{ZCB99}
-Zauli, D., F. Cassani and F.B. Bianchi.
+Zauli, D., F. Cassani and F. B. Bianchi.
\newblock Auto-antibodies in hepatitis C..
\newblock {\em Biomed Pharmacother}, 53(5-6):234-41, 1999.
\newblock
Modified: trunk/tests/format.raw
==============================================================================
--- trunk/tests/format.raw (original)
+++ trunk/tests/format.raw Sun Nov 30 14:13:34 2008
@@ -1,13 +1,13 @@
Bibliography
-[BML+90] Byrn, R.A., J. Mordenti, C. Lucas, D. Smith, S.A. Marsters, J.S. Johnson, P. Cossum, S.M. Chamow, F.M. Wurm, T. Gregory and et al. Biological properties of a CD4 immunoadhesin.. Nature, 344(6267):667-70, 1990.
-[CIF+99] Crosignani, A., P. Invernizzi, R. Ferrari, A. Manzin, S. Bruno, M. Zuin, F.B. Bianchi and M. Podda. Exacerbation of chronic hepatitis D during interferon alpha administration.. Ital J Gastroenterol Hepatol, 31(1):66-9, 1999.
-[FBC+92] Fusconi, M., H. Baum, A. Caselli, F. Cassani, G. Ballardini, M. Lenzi, U. Volta, D. Zauli and F.B. Bianchi. Demonstration of peptide-specific and cross-reactive epitopes in proteins reacting with antimitochondrial antibodies of primary biliary cirrhosis.. J Hepatol, 15(1-2):162-9, 1992.
+[BML+90] Byrn, R. A., J. Mordenti, C. Lucas, D. Smith, S. A. Marsters, J. S. Johnson, P. Cossum, S. M. Chamow, F. M. Wurm, T. Gregory and et al. Biological properties of a CD4 immunoadhesin.. Nature, 344(6267):667-70, 1990.
+[CIF+99] Crosignani, A., P. Invernizzi, R. Ferrari, A. Manzin, S. Bruno, M. Zuin, F. B. Bianchi and M. Podda. Exacerbation of chronic hepatitis D during interferon alpha administration.. Ital J Gastroenterol Hepatol, 31(1):66-9, 1999.
+[FBC+92] Fusconi, M., H. Baum, A. Caselli, F. Cassani, G. Ballardini, M. Lenzi, U. Volta, D. Zauli and F. B. Bianchi. Demonstration of peptide-specific and cross-reactive epitopes in proteins reacting with antimitochondrial antibodies of primary biliary cirrhosis.. J Hepatol, 15(1-2):162-9, 1992.
[Gob] Gobry, F. cECI est un TÅTÉéGü.
-[KMH+99] Kerkar, N., Y. Ma, M. Hussain, L. Muratori, C. Targett, R. Williams, F.B. Bianchi, G. Mieli-Vergani and D. Vergani. A novel assay for detecting antibodies to cytochrome P4502D6, the molecular target of liver kidney microsomal antibody type 1.. J Immunol Methods, 223(2):227-35, 1999.
-[LBS+99] Lenzi, M., S. Bellentani, G. Saccoccio, P. Muratori, F. Masutti, L. Muratori, F. Cassani, F.B. Bianchi and C. Tiribelli. Prevalence of non-organ-specific autoantibodies and chronic liver disease in the general population: a nested case-control study of the Dionysos cohort [see comments]. Gut, 45(3):435-41, 1999.
-[MCM+98] Muratori, L., M. Cataleta, P. Muratori, M. Lenzi and F.B. Bianchi. Liver/kidney microsomal antibody type 1 and liver cytosol antibody type 1 concentrations in type 2 autoimmune hepatitis.. Gut, 42(5):721-6, 1998.
-[VDF+98a] Volta, U., L. De Franceschi, F. Lari, N. Molinaro, M. Zoli and F.B. Bianchi. Coeliac disease hidden by cryptogenic hypertransaminasaemia.. Lancet, 352(9121):26-9, 1998.
-[VDF+98b] Volta, U., L. De Franceschi, N. Molinaro, F. Cassani, L. Muratori, M. Lenzi, F.B. Bianchi and A.J. Czaja. Frequency and significance of anti-gliadin and anti-endomysial antibodies in autoimmune hepatitis.. Dig Dis Sci, 43(10):2190-5, 1998.
-[ZCB99] Zauli, D., F. Cassani and F.B. Bianchi. Auto-antibodies in hepatitis C.. Biomed Pharmacother, 53(5-6):234-41, 1999.
+[KMH+99] Kerkar, N., Y. Ma, M. Hussain, L. Muratori, C. Targett, R. Williams, F. B. Bianchi, G. Mieli-Vergani and D. Vergani. A novel assay for detecting antibodies to cytochrome P4502D6, the molecular target of liver kidney microsomal antibody type 1.. J Immunol Methods, 223(2):227-35, 1999.
+[LBS+99] Lenzi, M., S. Bellentani, G. Saccoccio, P. Muratori, F. Masutti, L. Muratori, F. Cassani, F. B. Bianchi and C. Tiribelli. Prevalence of non-organ-specific autoantibodies and chronic liver disease in the general population: a nested case-control study of the Dionysos cohort [see comments]. Gut, 45(3):435-41, 1999.
+[MCM+98] Muratori, L., M. Cataleta, P. Muratori, M. Lenzi and F. B. Bianchi. Liver/kidney microsomal antibody type 1 and liver cytosol antibody type 1 concentrations in type 2 autoimmune hepatitis.. Gut, 42(5):721-6, 1998.
+[VDF+98a] Volta, U., L. De Franceschi, F. Lari, N. Molinaro, M. Zoli and F. B. Bianchi. Coeliac disease hidden by cryptogenic hypertransaminasaemia.. Lancet, 352(9121):26-9, 1998.
+[VDF+98b] Volta, U., L. De Franceschi, N. Molinaro, F. Cassani, L. Muratori, M. Lenzi, F. B. Bianchi and A. J. Czaja. Frequency and significance of anti-gliadin and anti-endomysial antibodies in autoimmune hepatitis.. Dig Dis Sci, 43(10):2190-5, 1998.
+[ZCB99] Zauli, D., F. Cassani and F. B. Bianchi. Auto-antibodies in hepatitis C.. Biomed Pharmacother, 53(5-6):234-41, 1999.
Modified: trunk/tests/format.text
==============================================================================
--- trunk/tests/format.text (original)
+++ trunk/tests/format.text Sun Nov 30 14:13:34 2008
@@ -1,17 +1,17 @@
-[BML+90] Byrn, R.A., J. Mordenti, C. Lucas, D. Smith, S.A. Marsters, J.S.
- Johnson, P. Cossum, S.M. Chamow, F.M. Wurm, T. Gregory and et al.
- Biological properties of a CD4 immunoadhesin.. Nature,
+[BML+90] Byrn, R. A., J. Mordenti, C. Lucas, D. Smith, S. A. Marsters, J.
+ S. Johnson, P. Cossum, S. M. Chamow, F. M. Wurm, T. Gregory and
+ et al. Biological properties of a CD4 immunoadhesin.. Nature,
344(6267):667-70, 1990.
[CIF+99] Crosignani, A., P. Invernizzi, R. Ferrari, A. Manzin, S. Bruno,
- M. Zuin, F.B. Bianchi and M. Podda. Exacerbation of chronic
+ M. Zuin, F. B. Bianchi and M. Podda. Exacerbation of chronic
hepatitis D during interferon alpha administration.. Ital J
Gastroenterol Hepatol, 31(1):66-9, 1999.
[FBC+92] Fusconi, M., H. Baum, A. Caselli, F. Cassani, G. Ballardini, M.
- Lenzi, U. Volta, D. Zauli and F.B. Bianchi. Demonstration of
+ Lenzi, U. Volta, D. Zauli and F. B. Bianchi. Demonstration of
peptide-specific and cross-reactive epitopes in proteins reacting
with antimitochondrial antibodies of primary biliary cirrhosis..
J Hepatol, 15(1-2):162-9, 1992.
@@ -19,32 +19,32 @@
[Gob] Gobry, F. cECI est un TÅTÉéGü.
[KMH+99] Kerkar, N., Y. Ma, M. Hussain, L. Muratori, C. Targett, R.
- Williams, F.B. Bianchi, G. Mieli-Vergani and D. Vergani. A novel
+ Williams, F. B. Bianchi, G. Mieli-Vergani and D. Vergani. A novel
assay for detecting antibodies to cytochrome P4502D6, the
molecular target of liver kidney microsomal antibody type 1.. J
Immunol Methods, 223(2):227-35, 1999.
[LBS+99] Lenzi, M., S. Bellentani, G. Saccoccio, P. Muratori, F. Masutti,
- L. Muratori, F. Cassani, F.B. Bianchi and C. Tiribelli.
+ L. Muratori, F. Cassani, F. B. Bianchi and C. Tiribelli.
Prevalence of non-organ-specific autoantibodies and chronic liver
disease in the general population: a nested case-control study of
the Dionysos cohort [see comments]. Gut, 45(3):435-41, 1999.
-[MCM+98] Muratori, L., M. Cataleta, P. Muratori, M. Lenzi and F.B.
+[MCM+98] Muratori, L., M. Cataleta, P. Muratori, M. Lenzi and F. B.
Bianchi. Liver/kidney microsomal antibody type 1 and liver
cytosol antibody type 1 concentrations in type 2 autoimmune
hepatitis.. Gut, 42(5):721-6, 1998.
-[VDF+98a] Volta, U., L. De Franceschi, F. Lari, N. Molinaro, M. Zoli and
- F.B. Bianchi. Coeliac disease hidden by cryptogenic
+[VDF+98a] Volta, U., L. De Franceschi, F. Lari, N. Molinaro, M. Zoli and F.
+ B. Bianchi. Coeliac disease hidden by cryptogenic
hypertransaminasaemia.. Lancet, 352(9121):26-9, 1998.
[VDF+98b] Volta, U., L. De Franceschi, N. Molinaro, F. Cassani, L.
- Muratori, M. Lenzi, F.B. Bianchi and A.J. Czaja. Frequency and
+ Muratori, M. Lenzi, F. B. Bianchi and A. J. Czaja. Frequency and
significance of anti-gliadin and anti-endomysial antibodies in
autoimmune hepatitis.. Dig Dis Sci, 43(10):2190-5, 1998.
-[ZCB99] Zauli, D., F. Cassani and F.B. Bianchi. Auto-antibodies in
+[ZCB99] Zauli, D., F. Cassani and F. B. Bianchi. Auto-antibodies in
hepatitis C.. Biomed Pharmacother, 53(5-6):234-41, 1999.
Modified: trunk/tests/medline.bib
==============================================================================
--- trunk/tests/medline.bib (original)
+++ trunk/tests/medline.bib Sun Nov 30 14:13:34 2008
@@ -2,10 +2,10 @@
@Article{BML+90,
- Author = {Byrn, R.A. and Mordenti, J. and Lucas, C. and Smith,
- D. and Marsters, S.A. and Johnson, J.S. and Cossum, P.
- and Chamow, S.M. and Wurm, F.M. and Gregory, T. and {et
- al.}},
+ Author = {Byrn, R. A. and Mordenti, J. and Lucas, C. and Smith,
+ D. and Marsters, S. A. and Johnson, J. S. and Cossum,
+ P. and Chamow, S. M. and Wurm, F. M. and Gregory, T.
+ and {et al.}},
Title = {Biological properties of a {CD}4 immunoadhesin.},
Journal = {Nature},
Volume = {344},
@@ -60,14 +60,14 @@
medline-sb = {IM},
medline-so = {Nature 1990 Apr 12;344(6267):667-70.},
medlineref = {90220871},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=1970124},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=1970124},
year = 1990
}
@Article{CIF+99,
Author = {Crosignani, A. and Invernizzi, P. and Ferrari, R. and
- Manzin, A. and Bruno, S. and Zuin, M. and Bianchi, F.B.
- and Podda, M.},
+ Manzin, A. and Bruno, S. and Zuin, M. and Bianchi, F.
+ B. and Podda, M.},
Title = {Exacerbation of chronic hepatitis {D} during
interferon alpha administration.},
Journal = {Ital J Gastroenterol Hepatol},
@@ -123,14 +123,14 @@
medline-sb = {M},
medline-so = {Ital J Gastroenterol Hepatol 1999 Jan-Feb;31(1):66-9},
medlineref = {99191206},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=0010091106},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=0010091106},
year = 1999
}
@Article{FBC+92,
Author = {Fusconi, M. and Baum, H. and Caselli, A. and Cassani,
F. and Ballardini, G. and Lenzi, M. and Volta, U. and
- Zauli, D. and Bianchi, F.B.},
+ Zauli, D. and Bianchi, F. B.},
Title = {Demonstration of peptide-specific and cross-reactive
epitopes in proteins reacting with antimitochondrial
antibodies of primary biliary cirrhosis.},
@@ -192,19 +192,19 @@
medline-sb = {M},
medline-so = {J Hepatol 1992 May;15(1-2):162-9},
medlineref = {92372924},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=0001380527},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=0001380527},
year = 1992
}
@Article{Gob,
Author = {Gobry, F.},
- Title = {{c}{ECI} est un {T}\AA{}{ST}\'{EO}\'e{O} {G}\"unther},
+ Title = {{c}{ECI} est un {T}\AA{}{ST}\'{E}{O}\'e{O} {G}\"unther},
medlineref = {0}
}
@Article{KMH+99,
Author = {Kerkar, N. and Ma, Y. and Hussain, M. and Muratori, L.
- and Targett, C. and Williams, R. and Bianchi, F.B. and
+ and Targett, C. and Williams, R. and Bianchi, F. B. and
Mieli-Vergani, G. and Vergani, D.},
Title = {A novel assay for detecting antibodies to cytochrome
{P}4502{D}6, the molecular target of liver kidney
@@ -264,14 +264,14 @@
medline-sb = {M ; X},
medline-so = {J Immunol Methods 1999 Mar 4;223(2):227-35},
medlineref = {99186962},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=0010089101},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=0010089101},
year = 1999
}
@Article{LBS+99,
Author = {Lenzi, M. and Bellentani, S. and Saccoccio, G. and
Muratori, P. and Masutti, F. and Muratori, L. and
- Cassani, F. and Bianchi, F.B. and Tiribelli, C.},
+ Cassani, F. and Bianchi, F. B. and Tiribelli, C.},
Title = {Prevalence of non-organ-specific autoantibodies and
chronic liver disease in the general population: a
nested case-control study of the {D}ionysos cohort [see
@@ -353,13 +353,13 @@
medline-sb = {A ; M},
medline-so = {Gut 1999 Sep;45(3):435-41},
medlineref = {99376911},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=0010446115},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=0010446115},
year = 1999
}
@Article{MCM+98,
Author = {Muratori, L. and Cataleta, M. and Muratori, P. and
- Lenzi, M. and Bianchi, F.B.},
+ Lenzi, M. and Bianchi, F. B.},
Title = {Liver/kidney microsomal antibody type 1 and liver
cytosol antibody type 1 concentrations in type 2
autoimmune hepatitis.},
@@ -422,13 +422,13 @@
medline-sb = {A ; M},
medline-so = {Gut 1998 May;42(5):721-6},
medlineref = {98323307},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=0009659171},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=0009659171},
year = 1998
}
@Article{VDF+98,
Author = {Volta, U. and De Franceschi, L. and Lari, F. and
- Molinaro, N. and Zoli, M. and Bianchi, F.B.},
+ Molinaro, N. and Zoli, M. and Bianchi, F. B.},
Title = {Coeliac disease hidden by cryptogenic
hypertransaminasaemia.},
Journal = {Lancet},
@@ -496,14 +496,14 @@
medline-sb = {A ; M ; X},
medline-so = {Lancet 1998 Jul 4;352(9121):26-9},
medlineref = {99015340},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=0009800742},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=0009800742},
year = 1998
}
@Article{VDF+98b,
Author = {Volta, U. and De Franceschi, L. and Molinaro, N. and
Cassani, F. and Muratori, L. and Lenzi, M. and Bianchi,
- F.B. and Czaja, A.J.},
+ F. B. and Czaja, A. J.},
Title = {Frequency and significance of anti-gliadin and
anti-endomysial antibodies in autoimmune hepatitis.},
Journal = {Dig Dis Sci},
@@ -568,12 +568,12 @@
medline-sb = {A ; M},
medline-so = {Dig Dis Sci 1998 Oct;43(10):2190-5},
medlineref = {99005113},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=0009790453},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=0009790453},
year = 1998
}
@Article{ZCB99,
- Author = {Zauli, D. and Cassani, F. and Bianchi, F.B.},
+ Author = {Zauli, D. and Cassani, F. and Bianchi, F. B.},
Title = {Auto-antibodies in hepatitis {C}.},
Journal = {Biomed Pharmacother},
Volume = {53},
@@ -619,7 +619,7 @@
medline-sb = {M},
medline-so = {Biomed Pharmacother 1999 Jun;53(5-6):234-41},
medlineref = {99353090},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=0010424245},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=0010424245},
year = 1999
}
Modified: trunk/tests/pubmed.bib
==============================================================================
--- trunk/tests/pubmed.bib (original)
+++ trunk/tests/pubmed.bib Sun Nov 30 14:13:34 2008
@@ -2,14 +2,14 @@
@Article{CBP+98,
- Author = {Cole, S.T. and Brosch, R. and Parkhill, J. and
+ Author = {Cole, S. T. and Brosch, R. and Parkhill, J. and
Garnier, T. and Churcher, C. and Harris, D. and Gordon,
- S.V. and Eiglmeier, K. and Gas, S. and Barry, 3rd, C.E.
- and Tekaia, F. and Badcock, K. and Basham, D. and
+ S. V. and Eiglmeier, K. and Gas, S. and Barry, 3rd, C.
+ E. and Tekaia, F. and Badcock, K. and Basham, D. and
Brown, D. and Chillingworth, T. and Connor, R. and
Davies, R. and Devlin, K. and Feltwell, T. and Gentles,
S. and Hamlin, N. and Holroyd, S. and Hornsby, T. and
- Jagels, K. and Barrell, B.G. and {et al.}},
+ Jagels, K. and Barrell, B. G. and {et al.}},
Title = {Deciphering the biology of {M}ycobacterium
tuberculosis from the complete genome sequence.},
Journal = {Nature},
@@ -75,12 +75,12 @@
; GENBANK/AL021930 ; GENBANK/AL021931},
medline-so = {Nature 1998 Jun 11;393(6685):537-44.},
medlineref = {98295987},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=9634230},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=9634230},
year = 1998
}
@Article{LB01,
- Author = {Lathe, 3rd, W.C. and Bork, P.},
+ Author = {Lathe, 3rd, W. C. and Bork, P.},
Title = {Evolution of tuf genes: ancient duplication,
differential loss and gene conversion.},
Journal = {FEBS Lett},
@@ -114,12 +114,12 @@
medline-sb = {IM},
medline-so = {FEBS Lett 2001 Aug 3;502(3):113-6.},
medlineref = {21466807},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=11583110},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=11583110},
year = 2001
}
@Article{Sai01,
- Author = {Saier, Jr, M.H.},
+ Author = {Saier, Jr, M. H.},
Title = {Evolution of transport proteins.},
Journal = {Genet Eng (N Y)},
Volume = {23},
@@ -141,13 +141,13 @@
medline-sb = {IM},
medline-so = {Genet Eng (N Y) 2001;23:1-10.},
medlineref = {21454690},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=11570098},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=11570098},
year = 2001
}
@Article{TRT+01,
- Author = {Teichmann, S.A. and Rison, S.C. and Thornton, J.M. and
- Riley, M. and Gough, J. and Chothia, C.},
+ Author = {Teichmann, S. A. and Rison, S. C. and Thornton, J. M.
+ and Riley, M. and Gough, J. and Chothia, C.},
Title = {Small-molecule metabolism: an enzyme mosaic.},
Journal = {Trends Biotechnol},
Volume = {19},
@@ -188,13 +188,13 @@
medline-sb = {IM},
medline-so = {Trends Biotechnol 2001 Dec;19(12):482-6.},
medlineref = {21568828},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=11711174},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=11711174},
year = 2001
}
@Article{TRT+01b,
- Author = {Teichmann, S.A. and Rison, S.C. and Thornton, J.M. and
- Riley, M. and Gough, J. and Chothia, C.},
+ Author = {Teichmann, S. A. and Rison, S. C. and Thornton, J. M.
+ and Riley, M. and Gough, J. and Chothia, C.},
Title = {The evolution and structural anatomy of the small
molecule metabolic pathways in {E}scherichia coli.},
Journal = {J Mol Biol},
@@ -274,13 +274,66 @@
medline-sb = {IM},
medline-so = {J Mol Biol 2001 Aug 24;311(4):693-708.},
medlineref = {21410060},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=11518524},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=11518524},
+ year = 2001
+}
+
+ Article{vHN+01,
+ Author = {van Helden, J. and Naim, A. and Lemer, C. and Mancuso,
+ R. and Eldridge, M. and Wodak, S. J.},
+ Title = {From molecular activities and processes to biological
+ function.},
+ Journal = {Brief Bioinform},
+ Volume = {2},
+ Number = {1},
+ Pages = {81-93},
+ abstract = {This paper describes how biological function can be
+ represented in terms of molecular activities and
+ processes. It presents several key features of a data
+ model that is based on a conceptual description of the
+ network of interactions between molecular entities
+ within the cell and between cells. This model is
+ implemented in the aMAZE database that presently deals
+ with information on metabolic pathways, gene
+ regulation, sub- or supracellular locations, and
+ transport. It is shown that this model constitutes a
+ useful generalisation of data representations currently
+ implemented in metabolic pathway databases, and that it
+ can furthermore include multiple schemes for
+ categorising and classifying molecular entities,
+ activities, processes and localisations. In particular,
+ we highlight the flexibility offered by our system in
+ representing multiple molecular activities and their
+ control, in viewing biological function at different
+ levels of resolution and in updating this view as our
+ knowledge evolves.},
+ authoraddress = {Free University of Brussels, Belgium.},
+ country = {England},
+ keywords = {Animal ; Classification ; Computational Biology ;
+ *Databases, Factual ; Human ; Metabolism ; Models,
+ Biological ; *Molecular Biology ; Support, Non-U.S.
+ Gov't},
+ language = {eng},
+ medline-da = {20010723},
+ medline-dcom = {20010906},
+ medline-edat = {2001/07/24 10:00},
+ medline-is = {1467-5463},
+ medline-jc = {D3P},
+ medline-jid = {100912837},
+ medline-mhda = {2001/09/08 10:01},
+ medline-pmid = {11465065},
+ medline-pst = {ppublish},
+ medline-pt = {Journal Article},
+ medline-sb = {IM},
+ medline-so = {Brief Bioinform 2001 Mar;2(1):81-93.},
+ medlineref = {21357591},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=11465065},
year = 2001
}
@Article{WHH+01,
- Author = {Whyte, R. and Hudson, J.A. and Hasell, S. and Gray, M.
- and O'Reilly, R.},
+ Author = {Whyte, R. and Hudson, J. A. and Hasell, S. and Gray,
+ M. and O'Reilly, R.},
Title = {Traditional {M}aori food preparation methods and food
safety.},
Journal = {Int J Food Microbiol},
@@ -331,60 +384,7 @@
medline-sb = {IM},
medline-so = {Int J Food Microbiol 2001 Sep 28;69(3):183-90.},
medlineref = {21489460},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=11603855},
- year = 2001
-}
-
- Article{vHN+01,
- Author = {van Helden, J. and Naim, A. and Lemer, C. and Mancuso,
- R. and Eldridge, M. and Wodak, S.J.},
- Title = {From molecular activities and processes to biological
- function.},
- Journal = {Brief Bioinform},
- Volume = {2},
- Number = {1},
- Pages = {81-93},
- abstract = {This paper describes how biological function can be
- represented in terms of molecular activities and
- processes. It presents several key features of a data
- model that is based on a conceptual description of the
- network of interactions between molecular entities
- within the cell and between cells. This model is
- implemented in the aMAZE database that presently deals
- with information on metabolic pathways, gene
- regulation, sub- or supracellular locations, and
- transport. It is shown that this model constitutes a
- useful generalisation of data representations currently
- implemented in metabolic pathway databases, and that it
- can furthermore include multiple schemes for
- categorising and classifying molecular entities,
- activities, processes and localisations. In particular,
- we highlight the flexibility offered by our system in
- representing multiple molecular activities and their
- control, in viewing biological function at different
- levels of resolution and in updating this view as our
- knowledge evolves.},
- authoraddress = {Free University of Brussels, Belgium.},
- country = {England},
- keywords = {Animal ; Classification ; Computational Biology ;
- *Databases, Factual ; Human ; Metabolism ; Models,
- Biological ; *Molecular Biology ; Support, Non-U.S.
- Gov't},
- language = {eng},
- medline-da = {20010723},
- medline-dcom = {20010906},
- medline-edat = {2001/07/24 10:00},
- medline-is = {1467-5463},
- medline-jc = {D3P},
- medline-jid = {100912837},
- medline-mhda = {2001/09/08 10:01},
- medline-pmid = {11465065},
- medline-pst = {ppublish},
- medline-pt = {Journal Article},
- medline-sb = {IM},
- medline-so = {Brief Bioinform 2001 Mar;2(1):81-93.},
- medlineref = {21357591},
- url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks\&dbfrom=pubmed\&retmode=ref\&id=11465065},
+ url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=11603855},
year = 2001
}
[
Date Prev][
Date Next] [
Thread Prev][
Thread Next]
[
Thread Index]
[
Date Index]
[
Author Index]
